Hb_034168_050

Information

Type -
Description -
Location Contig34168: 52066-53098
Sequence    

Annotation

kegg
ID mtr:MTR_141s0030
description Photosystem I assembly protein Ycf3
nr
ID XP_003638726.1
description Photosystem I assembly protein Ycf3 [Medicago truncatula]
swissprot
ID Q1KXV8
description Photosystem I assembly protein Ycf3 OS=Helianthus annuus GN=ycf3 PE=3 SV=1
trembl
ID G7JG13
description Photosystem I assembly protein Ycf3 OS=Medicago truncatula GN=MTR_4g051210 PE=4 SV=2
Gene Ontology
ID GO:0005739
description hypothetical chloroplast rf34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034168_050 0.0 - - Photosystem I assembly protein Ycf3 [Medicago truncatula]
2 Hb_028396_020 0.1224435058 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
3 Hb_006750_010 0.1350636487 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
4 Hb_000347_190 0.1422578468 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
5 Hb_003006_090 0.1564321289 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
6 Hb_000008_070 0.1574856791 - - kinase, putative [Ricinus communis]
7 Hb_000056_110 0.1613820457 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
8 Hb_010620_030 0.1676687593 - - beta-amyrin synthase [Euphorbia tirucalli]
9 Hb_000574_170 0.1678569496 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump-like [Jatropha curcas]
10 Hb_002894_080 0.1678971238 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000333_030 0.1681541518 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_000005_370 0.1684935925 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
13 Hb_000152_530 0.1709999032 - - hypothetical protein SELMODRAFT_231485 [Selaginella moellendorffii]
14 Hb_000350_030 0.1724989375 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00277 [Jatropha curcas]
15 Hb_003177_040 0.1727410608 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
16 Hb_000103_130 0.1753024255 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
17 Hb_002613_040 0.1760985165 - - phosphate translocator-related family protein [Populus trichocarpa]
18 Hb_001677_040 0.1767833437 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
19 Hb_001493_060 0.1768568446 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
20 Hb_003086_030 0.178214703 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]

Gene co-expression network

sample Hb_034168_050 Hb_034168_050 Hb_028396_020 Hb_028396_020 Hb_034168_050--Hb_028396_020 Hb_006750_010 Hb_006750_010 Hb_034168_050--Hb_006750_010 Hb_000347_190 Hb_000347_190 Hb_034168_050--Hb_000347_190 Hb_003006_090 Hb_003006_090 Hb_034168_050--Hb_003006_090 Hb_000008_070 Hb_000008_070 Hb_034168_050--Hb_000008_070 Hb_000056_110 Hb_000056_110 Hb_034168_050--Hb_000056_110 Hb_028396_020--Hb_006750_010 Hb_114917_010 Hb_114917_010 Hb_028396_020--Hb_114917_010 Hb_020378_020 Hb_020378_020 Hb_028396_020--Hb_020378_020 Hb_010222_040 Hb_010222_040 Hb_028396_020--Hb_010222_040 Hb_001677_040 Hb_001677_040 Hb_028396_020--Hb_001677_040 Hb_003462_040 Hb_003462_040 Hb_006750_010--Hb_003462_040 Hb_001369_010 Hb_001369_010 Hb_006750_010--Hb_001369_010 Hb_000820_110 Hb_000820_110 Hb_006750_010--Hb_000820_110 Hb_001195_380 Hb_001195_380 Hb_006750_010--Hb_001195_380 Hb_019516_060 Hb_019516_060 Hb_006750_010--Hb_019516_060 Hb_001493_060 Hb_001493_060 Hb_000347_190--Hb_001493_060 Hb_004242_170 Hb_004242_170 Hb_000347_190--Hb_004242_170 Hb_000350_030 Hb_000350_030 Hb_000347_190--Hb_000350_030 Hb_000347_190--Hb_003006_090 Hb_000347_190--Hb_001677_040 Hb_035834_010 Hb_035834_010 Hb_000347_190--Hb_035834_010 Hb_000271_220 Hb_000271_220 Hb_003006_090--Hb_000271_220 Hb_002542_060 Hb_002542_060 Hb_003006_090--Hb_002542_060 Hb_003006_090--Hb_003462_040 Hb_001195_660 Hb_001195_660 Hb_003006_090--Hb_001195_660 Hb_003006_090--Hb_001677_040 Hb_000603_020 Hb_000603_020 Hb_003006_090--Hb_000603_020 Hb_001257_050 Hb_001257_050 Hb_000008_070--Hb_001257_050 Hb_000139_060 Hb_000139_060 Hb_000008_070--Hb_000139_060 Hb_001278_020 Hb_001278_020 Hb_000008_070--Hb_001278_020 Hb_001541_200 Hb_001541_200 Hb_000008_070--Hb_001541_200 Hb_002246_030 Hb_002246_030 Hb_000008_070--Hb_002246_030 Hb_001474_060 Hb_001474_060 Hb_000008_070--Hb_001474_060 Hb_034507_050 Hb_034507_050 Hb_000056_110--Hb_034507_050 Hb_000787_210 Hb_000787_210 Hb_000056_110--Hb_000787_210 Hb_010174_100 Hb_010174_100 Hb_000056_110--Hb_010174_100 Hb_001252_030 Hb_001252_030 Hb_000056_110--Hb_001252_030 Hb_020141_030 Hb_020141_030 Hb_000056_110--Hb_020141_030 Hb_000056_110--Hb_001677_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.796626 3.77348 8.44899 24.7219 0.415881 3.85312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.547602 1.18588 2.65517 24.0744

CAGE analysis