Hb_053272_010

Information

Type -
Description -
Location Contig53272: 831-1424
Sequence    

Annotation

kegg
ID rcu:RCOM_0836430
description amino acid transporter, putative
nr
ID XP_012067644.1
description PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
swissprot
ID Q9FKS8
description Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1
trembl
ID B9S8W8
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0836430 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vacuolar amino acid transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053272_010 0.0 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
2 Hb_069338_010 0.162252564 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000099_140 0.2012109788 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
4 Hb_009662_070 0.2377888812 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
5 Hb_000005_140 0.2499470139 transcription factor TF Family: C2H2 unknown [Populus trichocarpa]
6 Hb_002401_020 0.253687299 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
7 Hb_002025_040 0.2820278907 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
8 Hb_030627_010 0.2855967084 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 [Sesamum indicum]
9 Hb_002119_140 0.2885928819 - - PREDICTED: uncharacterized protein LOC105634172 [Jatropha curcas]
10 Hb_002183_080 0.292672799 - - catalytic, putative [Ricinus communis]
11 Hb_004024_020 0.29671849 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_000340_120 0.3009914954 - - PREDICTED: uncharacterized protein LOC103406091 [Malus domestica]
13 Hb_029622_040 0.3023014229 - - conserved hypothetical protein [Ricinus communis]
14 Hb_022092_080 0.3074118786 - - -
15 Hb_002592_020 0.3075975746 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
16 Hb_000431_120 0.3077151786 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
17 Hb_000510_280 0.3104509187 transcription factor TF Family: AUX/IAA PREDICTED: auxin-induced protein 22D-like [Jatropha curcas]
18 Hb_000107_180 0.312399039 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
19 Hb_002968_050 0.3189176523 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_004883_010 0.3246795629 - - hypothetical protein JCGZ_23144 [Jatropha curcas]

Gene co-expression network

sample Hb_053272_010 Hb_053272_010 Hb_069338_010 Hb_069338_010 Hb_053272_010--Hb_069338_010 Hb_000099_140 Hb_000099_140 Hb_053272_010--Hb_000099_140 Hb_009662_070 Hb_009662_070 Hb_053272_010--Hb_009662_070 Hb_000005_140 Hb_000005_140 Hb_053272_010--Hb_000005_140 Hb_002401_020 Hb_002401_020 Hb_053272_010--Hb_002401_020 Hb_002025_040 Hb_002025_040 Hb_053272_010--Hb_002025_040 Hb_069338_010--Hb_000005_140 Hb_069338_010--Hb_009662_070 Hb_002183_080 Hb_002183_080 Hb_069338_010--Hb_002183_080 Hb_069338_010--Hb_000099_140 Hb_002968_050 Hb_002968_050 Hb_069338_010--Hb_002968_050 Hb_000099_140--Hb_000005_140 Hb_002119_140 Hb_002119_140 Hb_000099_140--Hb_002119_140 Hb_002876_340 Hb_002876_340 Hb_000099_140--Hb_002876_340 Hb_022092_080 Hb_022092_080 Hb_000099_140--Hb_022092_080 Hb_029622_040 Hb_029622_040 Hb_009662_070--Hb_029622_040 Hb_009662_070--Hb_002025_040 Hb_009662_070--Hb_000005_140 Hb_002045_030 Hb_002045_030 Hb_009662_070--Hb_002045_030 Hb_135737_010 Hb_135737_010 Hb_009662_070--Hb_135737_010 Hb_000438_120 Hb_000438_120 Hb_000005_140--Hb_000438_120 Hb_005914_120 Hb_005914_120 Hb_000005_140--Hb_005914_120 Hb_000005_140--Hb_002968_050 Hb_002759_050 Hb_002759_050 Hb_000005_140--Hb_002759_050 Hb_002401_020--Hb_069338_010 Hb_001124_200 Hb_001124_200 Hb_002401_020--Hb_001124_200 Hb_011794_100 Hb_011794_100 Hb_002401_020--Hb_011794_100 Hb_002401_020--Hb_000005_140 Hb_002401_020--Hb_009662_070 Hb_002025_040--Hb_029622_040 Hb_000500_250 Hb_000500_250 Hb_002025_040--Hb_000500_250 Hb_005653_010 Hb_005653_010 Hb_002025_040--Hb_005653_010 Hb_151052_010 Hb_151052_010 Hb_002025_040--Hb_151052_010 Hb_020178_030 Hb_020178_030 Hb_002025_040--Hb_020178_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0460277 0.26021 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.206144 0 0 0.19328

CAGE analysis