Hb_001124_200

Information

Type -
Description -
Location Contig1124: 207787-209136
Sequence    

Annotation

kegg
ID sita:101779627
description uncharacterized LOC101779627
nr
ID KJB72502.1
description hypothetical protein B456_011G186000 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2RPC1
description Gossypium raimondii chromosome 11, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_011G186000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03821: 207911-208337
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_200 0.0 - - hypothetical protein B456_011G186000 [Gossypium raimondii]
2 Hb_004662_020 0.1535631385 - - 40S ribosomal protein S9, putative [Ricinus communis]
3 Hb_010721_040 0.2359944332 transcription factor TF Family: M-type unnamed protein product [Vitis vinifera]
4 Hb_002401_020 0.2390128954 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
5 Hb_001478_030 0.2405500777 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000879_220 0.2462096629 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
7 Hb_000749_280 0.2495602618 - - PREDICTED: uncharacterized protein LOC105138169 [Populus euphratica]
8 Hb_000914_010 0.2508887308 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
9 Hb_004530_010 0.2510245716 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
10 Hb_001213_110 0.251341597 - - SOUL heme-binding family protein [Populus trichocarpa]
11 Hb_051410_010 0.2517584467 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
12 Hb_182424_020 0.2557334267 - - hypothetical protein POPTR_0006s24190g [Populus trichocarpa]
13 Hb_008714_030 0.2571005136 - - Multidrug resistance protein ABC transporter family protein, putative [Theobroma cacao]
14 Hb_000343_090 0.2580216468 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
15 Hb_019845_010 0.2591515472 - - protease inhibitor protein [Hevea brasiliensis]
16 Hb_000649_090 0.2626535032 - - unnamed protein product [Vitis vinifera]
17 Hb_094484_010 0.2640785804 - - kinase, putative [Ricinus communis]
18 Hb_102761_010 0.2644220561 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
19 Hb_091236_010 0.267381143 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
20 Hb_009316_050 0.2677489568 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]

Gene co-expression network

sample Hb_001124_200 Hb_001124_200 Hb_004662_020 Hb_004662_020 Hb_001124_200--Hb_004662_020 Hb_010721_040 Hb_010721_040 Hb_001124_200--Hb_010721_040 Hb_002401_020 Hb_002401_020 Hb_001124_200--Hb_002401_020 Hb_001478_030 Hb_001478_030 Hb_001124_200--Hb_001478_030 Hb_000879_220 Hb_000879_220 Hb_001124_200--Hb_000879_220 Hb_000749_280 Hb_000749_280 Hb_001124_200--Hb_000749_280 Hb_011476_010 Hb_011476_010 Hb_004662_020--Hb_011476_010 Hb_003186_050 Hb_003186_050 Hb_004662_020--Hb_003186_050 Hb_004274_010 Hb_004274_010 Hb_004662_020--Hb_004274_010 Hb_167457_010 Hb_167457_010 Hb_004662_020--Hb_167457_010 Hb_001452_150 Hb_001452_150 Hb_004662_020--Hb_001452_150 Hb_102761_010 Hb_102761_010 Hb_010721_040--Hb_102761_010 Hb_094484_010 Hb_094484_010 Hb_010721_040--Hb_094484_010 Hb_004530_010 Hb_004530_010 Hb_010721_040--Hb_004530_010 Hb_000343_090 Hb_000343_090 Hb_010721_040--Hb_000343_090 Hb_025161_030 Hb_025161_030 Hb_010721_040--Hb_025161_030 Hb_008714_030 Hb_008714_030 Hb_010721_040--Hb_008714_030 Hb_069338_010 Hb_069338_010 Hb_002401_020--Hb_069338_010 Hb_011794_100 Hb_011794_100 Hb_002401_020--Hb_011794_100 Hb_000005_140 Hb_000005_140 Hb_002401_020--Hb_000005_140 Hb_053272_010 Hb_053272_010 Hb_002401_020--Hb_053272_010 Hb_009662_070 Hb_009662_070 Hb_002401_020--Hb_009662_070 Hb_019925_010 Hb_019925_010 Hb_001478_030--Hb_019925_010 Hb_000090_010 Hb_000090_010 Hb_001478_030--Hb_000090_010 Hb_006483_020 Hb_006483_020 Hb_001478_030--Hb_006483_020 Hb_004117_230 Hb_004117_230 Hb_001478_030--Hb_004117_230 Hb_028818_020 Hb_028818_020 Hb_001478_030--Hb_028818_020 Hb_001123_300 Hb_001123_300 Hb_001478_030--Hb_001123_300 Hb_001213_110 Hb_001213_110 Hb_000879_220--Hb_001213_110 Hb_001959_100 Hb_001959_100 Hb_000879_220--Hb_001959_100 Hb_019845_010 Hb_019845_010 Hb_000879_220--Hb_019845_010 Hb_000879_220--Hb_001478_030 Hb_002119_150 Hb_002119_150 Hb_000879_220--Hb_002119_150 Hb_000340_240 Hb_000340_240 Hb_000879_220--Hb_000340_240 Hb_091236_010 Hb_091236_010 Hb_000749_280--Hb_091236_010 Hb_011519_040 Hb_011519_040 Hb_000749_280--Hb_011519_040 Hb_000402_060 Hb_000402_060 Hb_000749_280--Hb_000402_060 Hb_158092_090 Hb_158092_090 Hb_000749_280--Hb_158092_090 Hb_000377_130 Hb_000377_130 Hb_000749_280--Hb_000377_130 Hb_000620_050 Hb_000620_050 Hb_000749_280--Hb_000620_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.426268 7.49831 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 3.11065 0 2.34164 16.8325

CAGE analysis