Hb_004662_020

Information

Type -
Description -
Location Contig4662: 12798-15254
Sequence    

Annotation

kegg
ID rcu:RCOM_0855200
description 40S ribosomal protein S9, putative
nr
ID XP_002517490.1
description 40S ribosomal protein S9, putative [Ricinus communis]
swissprot
ID Q9LXG1
description 40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1
trembl
ID B9RUP5
description 40S ribosomal protein S9, putative OS=Ricinus communis GN=RCOM_0855200 PE=3 SV=1
Gene Ontology
ID GO:0005622
description 40s ribosomal protein s9-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44094: 11085-28601
cDNA
(Sanger)
(ID:Location)		 020_N13.ab1: 11140-28601 , 022_P11.ab1: 11122-28553 , 035_B12.ab1: 11158-28571

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004662_020 0.0 - - 40S ribosomal protein S9, putative [Ricinus communis]
2 Hb_001124_200 0.1535631385 - - hypothetical protein B456_011G186000 [Gossypium raimondii]
3 Hb_011476_010 0.2476334105 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
4 Hb_003186_050 0.2542084278 - - -
5 Hb_004274_010 0.2552916248 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
6 Hb_167457_010 0.2566179254 - - hypothetical protein glysoja_045622, partial [Glycine soja]
7 Hb_001452_150 0.2598881313 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
8 Hb_003427_040 0.2625217982 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
9 Hb_004021_020 0.2627852313 - - PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
10 Hb_009826_010 0.2639755252 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_000914_010 0.2661769479 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
12 Hb_051410_010 0.2681394247 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
13 Hb_000946_130 0.2745894583 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
14 Hb_000432_070 0.2745900523 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
15 Hb_000100_110 0.2791822486 - - -
16 Hb_000029_220 0.2859358054 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
17 Hb_094484_010 0.2863294978 - - kinase, putative [Ricinus communis]
18 Hb_182424_020 0.2869421368 - - hypothetical protein POPTR_0006s24190g [Populus trichocarpa]
19 Hb_000649_090 0.2924457171 - - unnamed protein product [Vitis vinifera]
20 Hb_024248_010 0.2935033755 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]

Gene co-expression network

sample Hb_004662_020 Hb_004662_020 Hb_001124_200 Hb_001124_200 Hb_004662_020--Hb_001124_200 Hb_011476_010 Hb_011476_010 Hb_004662_020--Hb_011476_010 Hb_003186_050 Hb_003186_050 Hb_004662_020--Hb_003186_050 Hb_004274_010 Hb_004274_010 Hb_004662_020--Hb_004274_010 Hb_167457_010 Hb_167457_010 Hb_004662_020--Hb_167457_010 Hb_001452_150 Hb_001452_150 Hb_004662_020--Hb_001452_150 Hb_010721_040 Hb_010721_040 Hb_001124_200--Hb_010721_040 Hb_002401_020 Hb_002401_020 Hb_001124_200--Hb_002401_020 Hb_001478_030 Hb_001478_030 Hb_001124_200--Hb_001478_030 Hb_000879_220 Hb_000879_220 Hb_001124_200--Hb_000879_220 Hb_000749_280 Hb_000749_280 Hb_001124_200--Hb_000749_280 Hb_011476_010--Hb_003186_050 Hb_011476_010--Hb_167457_010 Hb_011476_010--Hb_004274_010 Hb_011476_010--Hb_001452_150 Hb_000914_010 Hb_000914_010 Hb_011476_010--Hb_000914_010 Hb_003427_040 Hb_003427_040 Hb_011476_010--Hb_003427_040 Hb_003186_050--Hb_167457_010 Hb_003186_050--Hb_004274_010 Hb_003186_050--Hb_001452_150 Hb_000946_130 Hb_000946_130 Hb_003186_050--Hb_000946_130 Hb_003186_050--Hb_003427_040 Hb_004274_010--Hb_001452_150 Hb_004274_010--Hb_003427_040 Hb_009826_010 Hb_009826_010 Hb_004274_010--Hb_009826_010 Hb_000029_220 Hb_000029_220 Hb_004274_010--Hb_000029_220 Hb_024248_010 Hb_024248_010 Hb_004274_010--Hb_024248_010 Hb_167457_010--Hb_004274_010 Hb_167457_010--Hb_001452_150 Hb_005843_060 Hb_005843_060 Hb_167457_010--Hb_005843_060 Hb_167457_010--Hb_000946_130 Hb_001452_150--Hb_003427_040 Hb_001452_150--Hb_009826_010 Hb_001452_150--Hb_024248_010 Hb_001452_150--Hb_000029_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.399496 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.273801 0 0.37931 1.2897

CAGE analysis