Hb_001205_040

Information

Type -
Description -
Location Contig1205: 34959-37157
Sequence    

Annotation

kegg
ID vvi:100241000
description late embryogenesis abundant protein D-29
nr
ID CBI17507.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7SPC8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_040 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_005542_070 0.1391121534 - - hypothetical protein ZEAMMB73_851878 [Zea mays]
3 Hb_012691_020 0.1425498969 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
4 Hb_002781_040 0.1477961916 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000718_060 0.1479197208 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
6 Hb_001544_090 0.1555167566 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
7 Hb_012368_050 0.1559167786 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000749_290 0.1571911759 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
9 Hb_000032_420 0.1573641302 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
10 Hb_028008_040 0.1589406815 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001794_040 0.1613895092 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
12 Hb_009393_090 0.161443962 - - acyltransferase, putative [Ricinus communis]
13 Hb_000680_170 0.1617049609 - - hypothetical protein JCGZ_24789 [Jatropha curcas]
14 Hb_001117_050 0.162290637 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
15 Hb_015941_010 0.1627639534 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
16 Hb_008221_200 0.1637052353 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
17 Hb_012098_160 0.1638872795 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
18 Hb_000130_460 0.1641272344 - - hypothetical protein JCGZ_15296 [Jatropha curcas]
19 Hb_000342_040 0.1645115981 - - pollen specific protein sf21, putative [Ricinus communis]
20 Hb_005976_110 0.1645689518 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]

Gene co-expression network

sample Hb_001205_040 Hb_001205_040 Hb_005542_070 Hb_005542_070 Hb_001205_040--Hb_005542_070 Hb_012691_020 Hb_012691_020 Hb_001205_040--Hb_012691_020 Hb_002781_040 Hb_002781_040 Hb_001205_040--Hb_002781_040 Hb_000718_060 Hb_000718_060 Hb_001205_040--Hb_000718_060 Hb_001544_090 Hb_001544_090 Hb_001205_040--Hb_001544_090 Hb_012368_050 Hb_012368_050 Hb_001205_040--Hb_012368_050 Hb_005542_070--Hb_002781_040 Hb_005542_070--Hb_012368_050 Hb_002233_160 Hb_002233_160 Hb_005542_070--Hb_002233_160 Hb_003893_180 Hb_003893_180 Hb_005542_070--Hb_003893_180 Hb_000230_410 Hb_000230_410 Hb_005542_070--Hb_000230_410 Hb_000103_070 Hb_000103_070 Hb_005542_070--Hb_000103_070 Hb_003992_020 Hb_003992_020 Hb_012691_020--Hb_003992_020 Hb_048476_130 Hb_048476_130 Hb_012691_020--Hb_048476_130 Hb_003750_120 Hb_003750_120 Hb_012691_020--Hb_003750_120 Hb_001195_550 Hb_001195_550 Hb_012691_020--Hb_001195_550 Hb_001159_090 Hb_001159_090 Hb_012691_020--Hb_001159_090 Hb_002781_040--Hb_012368_050 Hb_005542_120 Hb_005542_120 Hb_002781_040--Hb_005542_120 Hb_002781_040--Hb_000103_070 Hb_000003_280 Hb_000003_280 Hb_002781_040--Hb_000003_280 Hb_001117_050 Hb_001117_050 Hb_002781_040--Hb_001117_050 Hb_009393_090 Hb_009393_090 Hb_000718_060--Hb_009393_090 Hb_008221_200 Hb_008221_200 Hb_000718_060--Hb_008221_200 Hb_001100_070 Hb_001100_070 Hb_000718_060--Hb_001100_070 Hb_003873_020 Hb_003873_020 Hb_000718_060--Hb_003873_020 Hb_002066_110 Hb_002066_110 Hb_000718_060--Hb_002066_110 Hb_007270_020 Hb_007270_020 Hb_000718_060--Hb_007270_020 Hb_005976_110 Hb_005976_110 Hb_001544_090--Hb_005976_110 Hb_001080_190 Hb_001080_190 Hb_001544_090--Hb_001080_190 Hb_001674_010 Hb_001674_010 Hb_001544_090--Hb_001674_010 Hb_001095_020 Hb_001095_020 Hb_001544_090--Hb_001095_020 Hb_000032_420 Hb_000032_420 Hb_001544_090--Hb_000032_420 Hb_007617_010 Hb_007617_010 Hb_001544_090--Hb_007617_010 Hb_012368_050--Hb_005542_120 Hb_012368_050--Hb_002233_160 Hb_000903_040 Hb_000903_040 Hb_012368_050--Hb_000903_040 Hb_006788_110 Hb_006788_110 Hb_012368_050--Hb_006788_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0220719 0.324281 1.08256 1.39848 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.159031 0 0.079938 0.894807

CAGE analysis