Hb_168392_010

Information

Type -
Description -
Location Contig168392: 3943-4721
Sequence    

Annotation

kegg
ID rcu:RCOM_0845390
description multidrug resistance pump, putative
nr
ID XP_002530958.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SY89
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0845390 PE=3 SV=1
Gene Ontology
ID GO:0016021
description multidrug resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168392_010 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_004883_010 0.1315696115 - - hypothetical protein JCGZ_23144 [Jatropha curcas]
3 Hb_000431_120 0.1901347261 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
4 Hb_017358_080 0.2129661844 - - -
5 Hb_029622_040 0.2208261329 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000510_280 0.2227524081 transcription factor TF Family: AUX/IAA PREDICTED: auxin-induced protein 22D-like [Jatropha curcas]
7 Hb_009662_070 0.2266378377 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
8 Hb_007574_040 0.2437448799 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
9 Hb_000742_030 0.251212206 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
10 Hb_000428_040 0.2526080398 - - PREDICTED: protein trichome birefringence-like 31 [Populus euphratica]
11 Hb_003304_110 0.2561223501 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002592_020 0.2571718967 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
13 Hb_008695_220 0.2581911113 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
14 Hb_000094_170 0.2588495286 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
15 Hb_000226_120 0.261182398 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
16 Hb_172426_020 0.2637577207 - - PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Jatropha curcas]
17 Hb_002045_030 0.2679884304 transcription factor TF Family: AUX/IAA hypothetical protein CISIN_1g047687mg [Citrus sinensis]
18 Hb_001758_090 0.2711796493 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
19 Hb_057556_010 0.2731385915 - - Light-regulated protein precursor, putative [Ricinus communis]
20 Hb_000005_140 0.273915659 transcription factor TF Family: C2H2 unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_168392_010 Hb_168392_010 Hb_004883_010 Hb_004883_010 Hb_168392_010--Hb_004883_010 Hb_000431_120 Hb_000431_120 Hb_168392_010--Hb_000431_120 Hb_017358_080 Hb_017358_080 Hb_168392_010--Hb_017358_080 Hb_029622_040 Hb_029622_040 Hb_168392_010--Hb_029622_040 Hb_000510_280 Hb_000510_280 Hb_168392_010--Hb_000510_280 Hb_009662_070 Hb_009662_070 Hb_168392_010--Hb_009662_070 Hb_004883_010--Hb_000431_120 Hb_004883_010--Hb_000510_280 Hb_001936_170 Hb_001936_170 Hb_004883_010--Hb_001936_170 Hb_000742_030 Hb_000742_030 Hb_004883_010--Hb_000742_030 Hb_003304_110 Hb_003304_110 Hb_004883_010--Hb_003304_110 Hb_000431_120--Hb_017358_080 Hb_000431_120--Hb_003304_110 Hb_000431_120--Hb_000742_030 Hb_000226_120 Hb_000226_120 Hb_000431_120--Hb_000226_120 Hb_017358_080--Hb_000226_120 Hb_000428_040 Hb_000428_040 Hb_017358_080--Hb_000428_040 Hb_147745_010 Hb_147745_010 Hb_017358_080--Hb_147745_010 Hb_116701_010 Hb_116701_010 Hb_017358_080--Hb_116701_010 Hb_029622_040--Hb_009662_070 Hb_000007_190 Hb_000007_190 Hb_029622_040--Hb_000007_190 Hb_000392_500 Hb_000392_500 Hb_029622_040--Hb_000392_500 Hb_103225_040 Hb_103225_040 Hb_029622_040--Hb_103225_040 Hb_152868_020 Hb_152868_020 Hb_029622_040--Hb_152868_020 Hb_003793_010 Hb_003793_010 Hb_029622_040--Hb_003793_010 Hb_002968_050 Hb_002968_050 Hb_000510_280--Hb_002968_050 Hb_002592_020 Hb_002592_020 Hb_000510_280--Hb_002592_020 Hb_000445_120 Hb_000445_120 Hb_000510_280--Hb_000445_120 Hb_000264_040 Hb_000264_040 Hb_000510_280--Hb_000264_040 Hb_000094_170 Hb_000094_170 Hb_000510_280--Hb_000094_170 Hb_000438_120 Hb_000438_120 Hb_000510_280--Hb_000438_120 Hb_002025_040 Hb_002025_040 Hb_009662_070--Hb_002025_040 Hb_000005_140 Hb_000005_140 Hb_009662_070--Hb_000005_140 Hb_069338_010 Hb_069338_010 Hb_009662_070--Hb_069338_010 Hb_002045_030 Hb_002045_030 Hb_009662_070--Hb_002045_030 Hb_135737_010 Hb_135737_010 Hb_009662_070--Hb_135737_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0733544 0.663235 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.111782 0.0878384 0 0 0.336106

CAGE analysis