Hb_000094_170

Information

Type -
Description -
Location Contig94: 154071-159016
Sequence    

Annotation

kegg
ID rcu:RCOM_1594150
description hypothetical protein
nr
ID XP_012071832.1
description PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04421 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63096: 151921-153604 , PASA_asmbl_63097: 155810-156284 , PASA_asmbl_63099: 156729-157697 , PASA_asmbl_63100: 158095-158440
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_170 0.0 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
2 Hb_001001_070 0.1372564009 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
3 Hb_008762_010 0.1543556558 - - dopamine beta-monooxygenase, putative [Ricinus communis]
4 Hb_001789_100 0.1553256151 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001141_250 0.1565057034 - - hypothetical protein glysoja_047929, partial [Glycine soja]
6 Hb_002081_020 0.1597343861 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
7 Hb_005914_120 0.1608622443 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
8 Hb_002820_150 0.1611953201 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000251_120 0.1644700776 - - O-acetyltransferase, putative [Ricinus communis]
10 Hb_008461_060 0.1683243708 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
11 Hb_000176_080 0.1713112964 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
12 Hb_000236_230 0.175256392 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
13 Hb_000030_130 0.1761064377 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
14 Hb_019516_060 0.1776762654 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
15 Hb_000417_220 0.179004026 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Cucumis melo]
16 Hb_001214_040 0.1791458161 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
17 Hb_000130_350 0.1822224523 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
18 Hb_002759_030 0.1854120749 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
19 Hb_000108_180 0.1856000781 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
20 Hb_006569_080 0.1874984927 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_024559 [Vitis vinifera]

Gene co-expression network

sample Hb_000094_170 Hb_000094_170 Hb_001001_070 Hb_001001_070 Hb_000094_170--Hb_001001_070 Hb_008762_010 Hb_008762_010 Hb_000094_170--Hb_008762_010 Hb_001789_100 Hb_001789_100 Hb_000094_170--Hb_001789_100 Hb_001141_250 Hb_001141_250 Hb_000094_170--Hb_001141_250 Hb_002081_020 Hb_002081_020 Hb_000094_170--Hb_002081_020 Hb_005914_120 Hb_005914_120 Hb_000094_170--Hb_005914_120 Hb_000251_120 Hb_000251_120 Hb_001001_070--Hb_000251_120 Hb_008461_060 Hb_008461_060 Hb_001001_070--Hb_008461_060 Hb_000108_180 Hb_000108_180 Hb_001001_070--Hb_000108_180 Hb_003177_040 Hb_003177_040 Hb_001001_070--Hb_003177_040 Hb_001001_070--Hb_002081_020 Hb_002759_030 Hb_002759_030 Hb_001001_070--Hb_002759_030 Hb_031284_060 Hb_031284_060 Hb_008762_010--Hb_031284_060 Hb_000130_350 Hb_000130_350 Hb_008762_010--Hb_000130_350 Hb_116701_010 Hb_116701_010 Hb_008762_010--Hb_116701_010 Hb_001189_080 Hb_001189_080 Hb_008762_010--Hb_001189_080 Hb_158092_050 Hb_158092_050 Hb_008762_010--Hb_158092_050 Hb_005523_030 Hb_005523_030 Hb_008762_010--Hb_005523_030 Hb_019516_060 Hb_019516_060 Hb_001789_100--Hb_019516_060 Hb_006750_010 Hb_006750_010 Hb_001789_100--Hb_006750_010 Hb_003462_040 Hb_003462_040 Hb_001789_100--Hb_003462_040 Hb_001789_100--Hb_001001_070 Hb_003086_030 Hb_003086_030 Hb_001789_100--Hb_003086_030 Hb_025645_020 Hb_025645_020 Hb_001789_100--Hb_025645_020 Hb_001214_040 Hb_001214_040 Hb_001141_250--Hb_001214_040 Hb_001141_250--Hb_008762_010 Hb_001141_250--Hb_000130_350 Hb_000417_220 Hb_000417_220 Hb_001141_250--Hb_000417_220 Hb_000428_040 Hb_000428_040 Hb_001141_250--Hb_000428_040 Hb_015807_130 Hb_015807_130 Hb_002081_020--Hb_015807_130 Hb_002081_020--Hb_008461_060 Hb_001699_080 Hb_001699_080 Hb_002081_020--Hb_001699_080 Hb_001289_070 Hb_001289_070 Hb_002081_020--Hb_001289_070 Hb_001688_050 Hb_001688_050 Hb_002081_020--Hb_001688_050 Hb_005914_120--Hb_002759_030 Hb_005305_040 Hb_005305_040 Hb_005914_120--Hb_005305_040 Hb_000161_140 Hb_000161_140 Hb_005914_120--Hb_000161_140 Hb_014361_010 Hb_014361_010 Hb_005914_120--Hb_014361_010 Hb_005914_120--Hb_008461_060 Hb_000864_050 Hb_000864_050 Hb_005914_120--Hb_000864_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.303359 1.37806 1.55727 13.2619 0.630866 0.139481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.634163 1.02865 0.0585471 0.0403713 9.12185

CAGE analysis