Hb_001189_080

Information

Type -
Description -
Location Contig1189: 58813-59837
Sequence    

Annotation

kegg
ID rcu:RCOM_1341430
description hypothetical protein
nr
ID XP_002515121.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMY2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1341430 PE=4 SV=1
Gene Ontology
ID GO:0010413
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05587: 59106-59743 , PASA_asmbl_05588: 59210-59637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001189_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001051_060 0.0568802391 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
3 Hb_005686_040 0.0577296487 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000086_490 0.0689069648 - - cellulose synthase [Populus tomentosa]
5 Hb_012633_020 0.0727892384 - - laccase, putative [Ricinus communis]
6 Hb_005523_030 0.0730178265 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
7 Hb_050514_030 0.0738572672 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
8 Hb_000776_090 0.0745591445 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
9 Hb_003747_160 0.0748062148 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000836_640 0.0784003003 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
11 Hb_015807_090 0.0784204187 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
12 Hb_001935_060 0.0797113388 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
13 Hb_002078_180 0.0799202801 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
14 Hb_000964_080 0.0832588418 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
15 Hb_001377_220 0.0842232233 - - dopamine beta-monooxygenase, putative [Ricinus communis]
16 Hb_010166_010 0.0851707931 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
17 Hb_000347_060 0.0860291718 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
18 Hb_001307_180 0.0868340939 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
19 Hb_009476_080 0.0881471199 - - BnaA03g18920D [Brassica napus]
20 Hb_002662_070 0.088691049 - - hypothetical protein JCGZ_16102 [Jatropha curcas]

Gene co-expression network

sample Hb_001189_080 Hb_001189_080 Hb_001051_060 Hb_001051_060 Hb_001189_080--Hb_001051_060 Hb_005686_040 Hb_005686_040 Hb_001189_080--Hb_005686_040 Hb_000086_490 Hb_000086_490 Hb_001189_080--Hb_000086_490 Hb_012633_020 Hb_012633_020 Hb_001189_080--Hb_012633_020 Hb_005523_030 Hb_005523_030 Hb_001189_080--Hb_005523_030 Hb_050514_030 Hb_050514_030 Hb_001189_080--Hb_050514_030 Hb_001051_060--Hb_005686_040 Hb_003747_160 Hb_003747_160 Hb_001051_060--Hb_003747_160 Hb_001051_060--Hb_000086_490 Hb_001051_060--Hb_005523_030 Hb_015807_090 Hb_015807_090 Hb_001051_060--Hb_015807_090 Hb_002078_180 Hb_002078_180 Hb_001051_060--Hb_002078_180 Hb_005686_040--Hb_002078_180 Hb_005686_040--Hb_000086_490 Hb_002835_360 Hb_002835_360 Hb_005686_040--Hb_002835_360 Hb_005686_040--Hb_005523_030 Hb_005686_040--Hb_015807_090 Hb_000086_490--Hb_005523_030 Hb_000086_490--Hb_015807_090 Hb_000328_030 Hb_000328_030 Hb_000086_490--Hb_000328_030 Hb_000086_490--Hb_002078_180 Hb_001307_180 Hb_001307_180 Hb_012633_020--Hb_001307_180 Hb_003645_040 Hb_003645_040 Hb_012633_020--Hb_003645_040 Hb_070771_010 Hb_070771_010 Hb_012633_020--Hb_070771_010 Hb_006065_030 Hb_006065_030 Hb_012633_020--Hb_006065_030 Hb_011912_010 Hb_011912_010 Hb_012633_020--Hb_011912_010 Hb_042083_010 Hb_042083_010 Hb_012633_020--Hb_042083_010 Hb_005523_030--Hb_015807_090 Hb_000776_090 Hb_000776_090 Hb_005523_030--Hb_000776_090 Hb_005523_030--Hb_002078_180 Hb_010166_010 Hb_010166_010 Hb_050514_030--Hb_010166_010 Hb_050514_030--Hb_000776_090 Hb_001935_060 Hb_001935_060 Hb_050514_030--Hb_001935_060 Hb_000836_640 Hb_000836_640 Hb_050514_030--Hb_000836_640 Hb_002739_140 Hb_002739_140 Hb_050514_030--Hb_002739_140 Hb_010288_010 Hb_010288_010 Hb_050514_030--Hb_010288_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.109763 0.481861 0.680581 12.8064 0.0664573 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0167508 7.38829

CAGE analysis