Hb_000690_060

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig690: 91603-94440
Sequence    

Annotation

kegg
ID tcc:TCM_016630
description Nbs-lrr resistance protein
nr
ID XP_011018453.1
description PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID A0A061G7Y7
description Nbs-lrr resistance protein OS=Theobroma cacao GN=TCM_016630 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rpm1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000690_060 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
2 Hb_000976_190 0.1329439973 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
3 Hb_001220_050 0.1369306749 - - DNA-damage-inducible protein f, putative [Ricinus communis]
4 Hb_000878_030 0.1417448074 - - calcium-dependent protein kinase, putative [Ricinus communis]
5 Hb_001723_030 0.1424236179 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
6 Hb_000023_370 0.1425564991 - - -
7 Hb_000537_070 0.1445193918 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
8 Hb_001907_070 0.1450757999 - - 50S ribosomal protein L1p, putative [Ricinus communis]
9 Hb_002660_190 0.1455518187 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
10 Hb_005147_080 0.1455816191 - - PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_004871_010 0.1472125408 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
12 Hb_011861_050 0.147652295 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
13 Hb_000684_430 0.1482311967 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
14 Hb_000684_280 0.1515155608 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
15 Hb_000345_370 0.1518918272 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
16 Hb_003878_080 0.1558588065 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
17 Hb_000144_060 0.1565576456 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000059_270 0.1569773753 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
19 Hb_010344_020 0.1577902729 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
20 Hb_189003_060 0.1583241903 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000690_060 Hb_000690_060 Hb_000976_190 Hb_000976_190 Hb_000690_060--Hb_000976_190 Hb_001220_050 Hb_001220_050 Hb_000690_060--Hb_001220_050 Hb_000878_030 Hb_000878_030 Hb_000690_060--Hb_000878_030 Hb_001723_030 Hb_001723_030 Hb_000690_060--Hb_001723_030 Hb_000023_370 Hb_000023_370 Hb_000690_060--Hb_000023_370 Hb_000537_070 Hb_000537_070 Hb_000690_060--Hb_000537_070 Hb_011310_140 Hb_011310_140 Hb_000976_190--Hb_011310_140 Hb_004871_010 Hb_004871_010 Hb_000976_190--Hb_004871_010 Hb_006787_090 Hb_006787_090 Hb_000976_190--Hb_006787_090 Hb_000194_010 Hb_000194_010 Hb_000976_190--Hb_000194_010 Hb_011861_050 Hb_011861_050 Hb_000976_190--Hb_011861_050 Hb_007426_170 Hb_007426_170 Hb_000976_190--Hb_007426_170 Hb_000345_370 Hb_000345_370 Hb_001220_050--Hb_000345_370 Hb_007769_040 Hb_007769_040 Hb_001220_050--Hb_007769_040 Hb_009020_040 Hb_009020_040 Hb_001220_050--Hb_009020_040 Hb_001220_050--Hb_011861_050 Hb_001220_050--Hb_001723_030 Hb_006198_130 Hb_006198_130 Hb_001220_050--Hb_006198_130 Hb_000878_030--Hb_001220_050 Hb_001009_260 Hb_001009_260 Hb_000878_030--Hb_001009_260 Hb_000878_030--Hb_009020_040 Hb_000331_490 Hb_000331_490 Hb_000878_030--Hb_000331_490 Hb_004735_020 Hb_004735_020 Hb_000878_030--Hb_004735_020 Hb_114893_040 Hb_114893_040 Hb_000878_030--Hb_114893_040 Hb_002217_140 Hb_002217_140 Hb_001723_030--Hb_002217_140 Hb_000803_240 Hb_000803_240 Hb_001723_030--Hb_000803_240 Hb_000309_020 Hb_000309_020 Hb_001723_030--Hb_000309_020 Hb_016461_030 Hb_016461_030 Hb_001723_030--Hb_016461_030 Hb_002027_410 Hb_002027_410 Hb_001723_030--Hb_002027_410 Hb_000684_430 Hb_000684_430 Hb_001723_030--Hb_000684_430 Hb_001907_070 Hb_001907_070 Hb_000023_370--Hb_001907_070 Hb_002053_110 Hb_002053_110 Hb_000023_370--Hb_002053_110 Hb_000363_060 Hb_000363_060 Hb_000023_370--Hb_000363_060 Hb_000023_370--Hb_001220_050 Hb_006911_070 Hb_006911_070 Hb_000023_370--Hb_006911_070 Hb_005618_150 Hb_005618_150 Hb_000023_370--Hb_005618_150 Hb_002928_030 Hb_002928_030 Hb_000537_070--Hb_002928_030 Hb_000661_090 Hb_000661_090 Hb_000537_070--Hb_000661_090 Hb_000537_070--Hb_000684_430 Hb_006062_030 Hb_006062_030 Hb_000537_070--Hb_006062_030 Hb_001269_500 Hb_001269_500 Hb_000537_070--Hb_001269_500 Hb_000537_070--Hb_001723_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0711535 0.0324672 0.129187 0.0446494 0.0471517 0.0316124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0154071 0.0484963 0.0463395 0.0192415 0.258403

CAGE analysis