Hb_000516_050

Information

Type -
Description -
Location Contig516: 104735-108160
Sequence    

Annotation

kegg
ID pop:POPTR_0011s04690g
description hydroxyproline-rich glycoprotein
nr
ID XP_002317226.1
description hydroxyproline-rich glycoprotein [Populus trichocarpa]
swissprot
ID Q1PEB4
description Uncharacterized protein At4g04980 OS=Arabidopsis thaliana GN=At4g04980 PE=2 SV=1
trembl
ID B9HYL6
description Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0011s04690g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000516_050 0.0 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
2 Hb_017358_070 0.2172896505 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
3 Hb_001227_070 0.2253290548 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
4 Hb_121089_050 0.2535877478 - - conserved hypothetical protein [Ricinus communis]
5 Hb_047418_010 0.2539207366 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
6 Hb_000454_040 0.2554979846 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
7 Hb_004236_040 0.2631496153 - - biotin carboxyl carrier protein [Vernicia fordii]
8 Hb_005563_010 0.2679584429 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
9 Hb_004041_050 0.2707537019 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
10 Hb_001017_130 0.2710710991 - - hypothetical protein POPTR_0010s06070g [Populus trichocarpa]
11 Hb_010175_010 0.2751437818 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000748_120 0.2767551915 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL1 [Jatropha curcas]
13 Hb_002028_180 0.2768766505 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
14 Hb_119044_010 0.2787645387 - - PREDICTED: stomatal closure-related actin-binding protein 2-like [Jatropha curcas]
15 Hb_008279_030 0.2790571405 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003197_010 0.2797863992 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001488_190 0.2831679861 - - alpha-amylase, putative [Ricinus communis]
18 Hb_005144_120 0.2844790822 - - PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Jatropha curcas]
19 Hb_007534_060 0.2854068983 - - protein binding protein, putative [Ricinus communis]
20 Hb_001180_010 0.2860088409 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000516_050 Hb_000516_050 Hb_017358_070 Hb_017358_070 Hb_000516_050--Hb_017358_070 Hb_001227_070 Hb_001227_070 Hb_000516_050--Hb_001227_070 Hb_121089_050 Hb_121089_050 Hb_000516_050--Hb_121089_050 Hb_047418_010 Hb_047418_010 Hb_000516_050--Hb_047418_010 Hb_000454_040 Hb_000454_040 Hb_000516_050--Hb_000454_040 Hb_004236_040 Hb_004236_040 Hb_000516_050--Hb_004236_040 Hb_017358_070--Hb_047418_010 Hb_005563_010 Hb_005563_010 Hb_017358_070--Hb_005563_010 Hb_005144_120 Hb_005144_120 Hb_017358_070--Hb_005144_120 Hb_000328_010 Hb_000328_010 Hb_017358_070--Hb_000328_010 Hb_017358_070--Hb_004236_040 Hb_003197_010 Hb_003197_010 Hb_017358_070--Hb_003197_010 Hb_000879_170 Hb_000879_170 Hb_001227_070--Hb_000879_170 Hb_119044_010 Hb_119044_010 Hb_001227_070--Hb_119044_010 Hb_000748_120 Hb_000748_120 Hb_001227_070--Hb_000748_120 Hb_001544_050 Hb_001544_050 Hb_001227_070--Hb_001544_050 Hb_001180_010 Hb_001180_010 Hb_001227_070--Hb_001180_010 Hb_147378_010 Hb_147378_010 Hb_001227_070--Hb_147378_010 Hb_004041_050 Hb_004041_050 Hb_121089_050--Hb_004041_050 Hb_002817_040 Hb_002817_040 Hb_121089_050--Hb_002817_040 Hb_000649_040 Hb_000649_040 Hb_121089_050--Hb_000649_040 Hb_048476_140 Hb_048476_140 Hb_121089_050--Hb_048476_140 Hb_002028_180 Hb_002028_180 Hb_121089_050--Hb_002028_180 Hb_121089_050--Hb_005563_010 Hb_047418_010--Hb_004236_040 Hb_000019_080 Hb_000019_080 Hb_047418_010--Hb_000019_080 Hb_058620_080 Hb_058620_080 Hb_047418_010--Hb_058620_080 Hb_003948_020 Hb_003948_020 Hb_047418_010--Hb_003948_020 Hb_004650_050 Hb_004650_050 Hb_047418_010--Hb_004650_050 Hb_000442_070 Hb_000442_070 Hb_047418_010--Hb_000442_070 Hb_001488_190 Hb_001488_190 Hb_000454_040--Hb_001488_190 Hb_005622_020 Hb_005622_020 Hb_000454_040--Hb_005622_020 Hb_004724_170 Hb_004724_170 Hb_000454_040--Hb_004724_170 Hb_000454_040--Hb_002028_180 Hb_007534_060 Hb_007534_060 Hb_000454_040--Hb_007534_060 Hb_000312_050 Hb_000312_050 Hb_000454_040--Hb_000312_050 Hb_004236_040--Hb_003948_020 Hb_002411_100 Hb_002411_100 Hb_004236_040--Hb_002411_100 Hb_004236_040--Hb_000019_080 Hb_004236_040--Hb_058620_080 Hb_005563_040 Hb_005563_040 Hb_004236_040--Hb_005563_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0318549 0 0.0730152 0.0648992 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0142241 0.0271046 0.00564933 0.0906614

CAGE analysis