Hb_121089_050

Information

Type -
Description -
Location Contig121089: 50302-50919
Sequence    

Annotation

kegg
ID rcu:RCOM_1692280
description hypothetical protein
nr
ID XP_002509975.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCU1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1692280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121089_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004041_050 0.1188721976 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
3 Hb_002817_040 0.1432130776 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
4 Hb_000649_040 0.1462902137 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
5 Hb_048476_140 0.1472666886 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
6 Hb_002028_180 0.1552620767 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
7 Hb_005563_010 0.1578911215 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
8 Hb_042083_030 0.1584946159 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_001369_100 0.1605056456 - - hypothetical protein JCGZ_26280 [Jatropha curcas]
10 Hb_000086_210 0.1630319234 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_000749_020 0.1660643119 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
12 Hb_000612_090 0.1684455437 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
13 Hb_000445_120 0.1689911329 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000139_300 0.1708446014 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
15 Hb_001180_010 0.173017589 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
16 Hb_119044_010 0.1773291855 - - PREDICTED: stomatal closure-related actin-binding protein 2-like [Jatropha curcas]
17 Hb_000108_240 0.1778003449 - - hypothetical protein Csa_1G600150 [Cucumis sativus]
18 Hb_000076_030 0.1804846395 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
19 Hb_002085_050 0.1833157056 - - PREDICTED: beta-galactosidase 8 [Jatropha curcas]
20 Hb_001369_010 0.1834980671 - - Nodulation receptor kinase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_121089_050 Hb_121089_050 Hb_004041_050 Hb_004041_050 Hb_121089_050--Hb_004041_050 Hb_002817_040 Hb_002817_040 Hb_121089_050--Hb_002817_040 Hb_000649_040 Hb_000649_040 Hb_121089_050--Hb_000649_040 Hb_048476_140 Hb_048476_140 Hb_121089_050--Hb_048476_140 Hb_002028_180 Hb_002028_180 Hb_121089_050--Hb_002028_180 Hb_005563_010 Hb_005563_010 Hb_121089_050--Hb_005563_010 Hb_004041_050--Hb_048476_140 Hb_001180_010 Hb_001180_010 Hb_004041_050--Hb_001180_010 Hb_000076_030 Hb_000076_030 Hb_004041_050--Hb_000076_030 Hb_042083_030 Hb_042083_030 Hb_004041_050--Hb_042083_030 Hb_002759_220 Hb_002759_220 Hb_004041_050--Hb_002759_220 Hb_001369_100 Hb_001369_100 Hb_002817_040--Hb_001369_100 Hb_009079_050 Hb_009079_050 Hb_002817_040--Hb_009079_050 Hb_000749_020 Hb_000749_020 Hb_002817_040--Hb_000749_020 Hb_000108_150 Hb_000108_150 Hb_002817_040--Hb_000108_150 Hb_000612_090 Hb_000612_090 Hb_002817_040--Hb_000612_090 Hb_002817_040--Hb_002028_180 Hb_000107_350 Hb_000107_350 Hb_000649_040--Hb_000107_350 Hb_003935_070 Hb_003935_070 Hb_000649_040--Hb_003935_070 Hb_000808_150 Hb_000808_150 Hb_000649_040--Hb_000808_150 Hb_000077_310 Hb_000077_310 Hb_000649_040--Hb_000077_310 Hb_000649_040--Hb_000749_020 Hb_000805_010 Hb_000805_010 Hb_000649_040--Hb_000805_010 Hb_048476_140--Hb_000076_030 Hb_048476_140--Hb_001180_010 Hb_022693_110 Hb_022693_110 Hb_048476_140--Hb_022693_110 Hb_048476_140--Hb_042083_030 Hb_161396_010 Hb_161396_010 Hb_048476_140--Hb_161396_010 Hb_119044_010 Hb_119044_010 Hb_002028_180--Hb_119044_010 Hb_002028_180--Hb_000612_090 Hb_002028_180--Hb_000805_010 Hb_002028_180--Hb_003935_070 Hb_000616_030 Hb_000616_030 Hb_002028_180--Hb_000616_030 Hb_001976_030 Hb_001976_030 Hb_005563_010--Hb_001976_030 Hb_000049_180 Hb_000049_180 Hb_005563_010--Hb_000049_180 Hb_000086_210 Hb_000086_210 Hb_005563_010--Hb_000086_210 Hb_005563_010--Hb_001369_100 Hb_000139_300 Hb_000139_300 Hb_005563_010--Hb_000139_300 Hb_001628_120 Hb_001628_120 Hb_005563_010--Hb_001628_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.177853 0.0425774 2.67634 3.69378 0.285169 0.194755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0966608 0.5318 0.934075 0.715355 3.6926

CAGE analysis