Hb_002105_010

Information

Type -
Description -
Location Contig2105: 982-11090
Sequence    

Annotation

kegg
ID rcu:RCOM_0618840
description hypothetical protein
nr
ID XP_002528846.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q69ZF3
description Non-lysosomal glucosylceramidase OS=Mus musculus GN=Gba2 PE=1 SV=2
trembl
ID B9SS77
description Non-lysosomal glucosylceramidase OS=Ricinus communis GN=RCOM_0618840 PE=3 SV=1
Gene Ontology
ID GO:0016021
description non-lysosomal glucosylceramidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21761: 2181-2311 , PASA_asmbl_21762: 1153-2749 , PASA_asmbl_21763: 4836-5276 , PASA_asmbl_21764: 7660-9435 , PASA_asmbl_21765: 9971-10738
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002105_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012098_150 0.1244013261 - - ARC5 protein [Manihot esculenta]
3 Hb_004116_160 0.1294625342 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
4 Hb_000676_060 0.1364252875 - - Sec14 cytosolic factor, putative [Ricinus communis]
5 Hb_066967_020 0.1367798955 - - RAB6-interacting protein, putative [Ricinus communis]
6 Hb_006326_050 0.1398900981 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
7 Hb_005271_160 0.1412328638 - - PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]
8 Hb_015531_030 0.1417937235 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003398_100 0.1434731773 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001959_240 0.1445924471 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_001541_100 0.1447541594 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
12 Hb_000445_140 0.1455354398 - - hypothetical protein RCOM_0561550 [Ricinus communis]
13 Hb_031042_060 0.1468995757 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_065525_130 0.1499668142 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
15 Hb_006588_160 0.1563927912 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_002870_020 0.1572271999 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
17 Hb_000108_050 0.1584198818 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
18 Hb_000098_240 0.1584885996 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
19 Hb_000029_110 0.1611059893 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006846_070 0.1618345869 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002105_010 Hb_002105_010 Hb_012098_150 Hb_012098_150 Hb_002105_010--Hb_012098_150 Hb_004116_160 Hb_004116_160 Hb_002105_010--Hb_004116_160 Hb_000676_060 Hb_000676_060 Hb_002105_010--Hb_000676_060 Hb_066967_020 Hb_066967_020 Hb_002105_010--Hb_066967_020 Hb_006326_050 Hb_006326_050 Hb_002105_010--Hb_006326_050 Hb_005271_160 Hb_005271_160 Hb_002105_010--Hb_005271_160 Hb_065525_130 Hb_065525_130 Hb_012098_150--Hb_065525_130 Hb_000071_150 Hb_000071_150 Hb_012098_150--Hb_000071_150 Hb_001541_100 Hb_001541_100 Hb_012098_150--Hb_001541_100 Hb_000445_140 Hb_000445_140 Hb_012098_150--Hb_000445_140 Hb_006570_010 Hb_006570_010 Hb_012098_150--Hb_006570_010 Hb_003398_100 Hb_003398_100 Hb_012098_150--Hb_003398_100 Hb_054865_020 Hb_054865_020 Hb_004116_160--Hb_054865_020 Hb_001396_020 Hb_001396_020 Hb_004116_160--Hb_001396_020 Hb_000098_240 Hb_000098_240 Hb_004116_160--Hb_000098_240 Hb_001279_020 Hb_001279_020 Hb_004116_160--Hb_001279_020 Hb_000529_130 Hb_000529_130 Hb_004116_160--Hb_000529_130 Hb_001624_040 Hb_001624_040 Hb_004116_160--Hb_001624_040 Hb_000016_310 Hb_000016_310 Hb_000676_060--Hb_000016_310 Hb_002915_010 Hb_002915_010 Hb_000676_060--Hb_002915_010 Hb_022693_130 Hb_022693_130 Hb_000676_060--Hb_022693_130 Hb_002150_140 Hb_002150_140 Hb_000676_060--Hb_002150_140 Hb_002107_050 Hb_002107_050 Hb_000676_060--Hb_002107_050 Hb_012779_080 Hb_012779_080 Hb_000676_060--Hb_012779_080 Hb_021650_010 Hb_021650_010 Hb_066967_020--Hb_021650_010 Hb_006555_040 Hb_006555_040 Hb_066967_020--Hb_006555_040 Hb_001232_150 Hb_001232_150 Hb_066967_020--Hb_001232_150 Hb_029142_030 Hb_029142_030 Hb_066967_020--Hb_029142_030 Hb_000140_440 Hb_000140_440 Hb_066967_020--Hb_000140_440 Hb_000694_030 Hb_000694_030 Hb_066967_020--Hb_000694_030 Hb_002870_020 Hb_002870_020 Hb_006326_050--Hb_002870_020 Hb_028207_020 Hb_028207_020 Hb_006326_050--Hb_028207_020 Hb_178968_140 Hb_178968_140 Hb_006326_050--Hb_178968_140 Hb_006326_050--Hb_029142_030 Hb_002255_040 Hb_002255_040 Hb_006326_050--Hb_002255_040 Hb_065755_030 Hb_065755_030 Hb_006326_050--Hb_065755_030 Hb_008206_060 Hb_008206_060 Hb_005271_160--Hb_008206_060 Hb_005271_160--Hb_065525_130 Hb_008092_050 Hb_008092_050 Hb_005271_160--Hb_008092_050 Hb_003900_030 Hb_003900_030 Hb_005271_160--Hb_003900_030 Hb_005271_160--Hb_012098_150 Hb_001959_240 Hb_001959_240 Hb_005271_160--Hb_001959_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.58783 0.433436 2.82582 1.34188 0.805761 1.5754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.208362 0.292793 0.492678 0.771211 2.19797

CAGE analysis