Hb_006788_080

Information

Type -
Description -
Location Contig6788: 41455-43109
Sequence    

Annotation

kegg
ID rcu:RCOM_0991000
description ammonium transporter, putative
nr
ID XP_002520958.1
description ammonium transporter, putative [Ricinus communis]
swissprot
ID Q84KJ6
description Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1
trembl
ID B9S4Q1
description Ammonium transporter OS=Ricinus communis GN=RCOM_0991000 PE=3 SV=1
Gene Ontology
ID GO:0005834
description ammonium transporter 3 member 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006788_080 0.0 - - ammonium transporter, putative [Ricinus communis]
2 Hb_000042_370 0.1918734838 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003747_110 0.2222871637 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
4 Hb_001060_080 0.2777720536 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
5 Hb_003799_020 0.2908422568 - - hypothetical protein VITISV_003261 [Vitis vinifera]
6 Hb_006907_090 0.3139825885 - - -
7 Hb_000061_280 0.3443739004 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
8 Hb_001545_190 0.3537554681 - - hypothetical protein VITISV_012031 [Vitis vinifera]
9 Hb_150851_010 0.3609988361 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_008835_010 0.3648759172 - - PREDICTED: uncharacterized protein LOC105851721 [Cicer arietinum]
11 Hb_012399_010 0.3782721735 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_001008_140 0.3887892102 - - -
13 Hb_000010_100 0.3915414908 - - hypothetical protein POPTR_0016s14440g [Populus trichocarpa]
14 Hb_000220_140 0.3950991773 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
15 Hb_000302_210 0.39971412 - - conserved hypothetical protein [Ricinus communis]
16 Hb_139691_010 0.4043216611 - - -
17 Hb_008035_050 0.404519936 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
18 Hb_003659_020 0.4046999813 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
19 Hb_000392_290 0.4063489256 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
20 Hb_014068_020 0.4076581949 - - PREDICTED: uncharacterized protein LOC105628343 [Jatropha curcas]

Gene co-expression network

sample Hb_006788_080 Hb_006788_080 Hb_000042_370 Hb_000042_370 Hb_006788_080--Hb_000042_370 Hb_003747_110 Hb_003747_110 Hb_006788_080--Hb_003747_110 Hb_001060_080 Hb_001060_080 Hb_006788_080--Hb_001060_080 Hb_003799_020 Hb_003799_020 Hb_006788_080--Hb_003799_020 Hb_006907_090 Hb_006907_090 Hb_006788_080--Hb_006907_090 Hb_000061_280 Hb_000061_280 Hb_006788_080--Hb_000061_280 Hb_000042_370--Hb_003747_110 Hb_014068_020 Hb_014068_020 Hb_000042_370--Hb_014068_020 Hb_000042_370--Hb_003799_020 Hb_006816_520 Hb_006816_520 Hb_000042_370--Hb_006816_520 Hb_000985_070 Hb_000985_070 Hb_000042_370--Hb_000985_070 Hb_003747_110--Hb_003799_020 Hb_000220_140 Hb_000220_140 Hb_003747_110--Hb_000220_140 Hb_000302_210 Hb_000302_210 Hb_003747_110--Hb_000302_210 Hb_003747_110--Hb_000985_070 Hb_001060_080--Hb_006907_090 Hb_007403_080 Hb_007403_080 Hb_001060_080--Hb_007403_080 Hb_001545_190 Hb_001545_190 Hb_001060_080--Hb_001545_190 Hb_001060_080--Hb_000061_280 Hb_117807_030 Hb_117807_030 Hb_001060_080--Hb_117807_030 Hb_003799_020--Hb_000302_210 Hb_001221_280 Hb_001221_280 Hb_003799_020--Hb_001221_280 Hb_001008_140 Hb_001008_140 Hb_003799_020--Hb_001008_140 Hb_098785_010 Hb_098785_010 Hb_003799_020--Hb_098785_010 Hb_015475_010 Hb_015475_010 Hb_006907_090--Hb_015475_010 Hb_152362_010 Hb_152362_010 Hb_006907_090--Hb_152362_010 Hb_000120_690 Hb_000120_690 Hb_006907_090--Hb_000120_690 Hb_001235_090 Hb_001235_090 Hb_006907_090--Hb_001235_090 Hb_000061_280--Hb_001545_190 Hb_150851_010 Hb_150851_010 Hb_000061_280--Hb_150851_010 Hb_008835_010 Hb_008835_010 Hb_000061_280--Hb_008835_010 Hb_012399_010 Hb_012399_010 Hb_000061_280--Hb_012399_010 Hb_003025_070 Hb_003025_070 Hb_000061_280--Hb_003025_070 Hb_021419_050 Hb_021419_050 Hb_000061_280--Hb_021419_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0284056 0.0212353 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0479741 0 0

CAGE analysis