Hb_015475_010

Information

Type -
Description -
Location Contig15475: 11489-11845
Sequence    

Annotation

kegg
ID -
description -
nr
ID CAN59754.1
description hypothetical protein VITISV_034342 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BR20
description Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_034342 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015475_010 0.0 - - hypothetical protein VITISV_034342 [Vitis vinifera]
2 Hb_000925_040 0.2338980636 - - kinase, putative [Ricinus communis]
3 Hb_006907_090 0.2435144202 - - -
4 Hb_001818_030 0.3094835134 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
5 Hb_002631_190 0.3126694811 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
6 Hb_002999_040 0.3140016879 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008864_020 0.3232967216 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006816_520 0.3335264772 - - epoxide hydrolase, putative [Ricinus communis]
9 Hb_012092_100 0.3339538503 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002301_090 0.3369952884 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]
11 Hb_000302_210 0.3430084378 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000062_200 0.3465127988 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
13 Hb_001699_120 0.3540700263 - - Protein P21, putative [Ricinus communis]
14 Hb_000010_300 0.3585938178 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
15 Hb_152362_010 0.3596370579 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
16 Hb_001060_080 0.3626245991 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
17 Hb_014068_020 0.3632263276 - - PREDICTED: uncharacterized protein LOC105628343 [Jatropha curcas]
18 Hb_003001_020 0.3675727552 - - hypothetical protein JCGZ_17508 [Jatropha curcas]
19 Hb_002739_030 0.3702639891 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG11 isoform X2 [Cucumis sativus]
20 Hb_008864_100 0.3704173803 - - PREDICTED: uncharacterized protein LOC105631832 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_015475_010 Hb_015475_010 Hb_000925_040 Hb_000925_040 Hb_015475_010--Hb_000925_040 Hb_006907_090 Hb_006907_090 Hb_015475_010--Hb_006907_090 Hb_001818_030 Hb_001818_030 Hb_015475_010--Hb_001818_030 Hb_002631_190 Hb_002631_190 Hb_015475_010--Hb_002631_190 Hb_002999_040 Hb_002999_040 Hb_015475_010--Hb_002999_040 Hb_008864_020 Hb_008864_020 Hb_015475_010--Hb_008864_020 Hb_012092_100 Hb_012092_100 Hb_000925_040--Hb_012092_100 Hb_000010_300 Hb_000010_300 Hb_000925_040--Hb_000010_300 Hb_000925_040--Hb_002631_190 Hb_000320_260 Hb_000320_260 Hb_000925_040--Hb_000320_260 Hb_000302_210 Hb_000302_210 Hb_000925_040--Hb_000302_210 Hb_001060_080 Hb_001060_080 Hb_006907_090--Hb_001060_080 Hb_152362_010 Hb_152362_010 Hb_006907_090--Hb_152362_010 Hb_000120_690 Hb_000120_690 Hb_006907_090--Hb_000120_690 Hb_001235_090 Hb_001235_090 Hb_006907_090--Hb_001235_090 Hb_006788_080 Hb_006788_080 Hb_006907_090--Hb_006788_080 Hb_001818_030--Hb_002999_040 Hb_003581_180 Hb_003581_180 Hb_001818_030--Hb_003581_180 Hb_000856_160 Hb_000856_160 Hb_001818_030--Hb_000856_160 Hb_001818_030--Hb_000925_040 Hb_001818_030--Hb_152362_010 Hb_002631_190--Hb_012092_100 Hb_008864_100 Hb_008864_100 Hb_002631_190--Hb_008864_100 Hb_002631_190--Hb_000010_300 Hb_001493_160 Hb_001493_160 Hb_002631_190--Hb_001493_160 Hb_002301_090 Hb_002301_090 Hb_002631_190--Hb_002301_090 Hb_002999_040--Hb_003581_180 Hb_002999_040--Hb_000856_160 Hb_002999_040--Hb_152362_010 Hb_002999_040--Hb_000925_040 Hb_003659_020 Hb_003659_020 Hb_002999_040--Hb_003659_020 Hb_045985_010 Hb_045985_010 Hb_008864_020--Hb_045985_010 Hb_006615_110 Hb_006615_110 Hb_008864_020--Hb_006615_110 Hb_000988_010 Hb_000988_010 Hb_008864_020--Hb_000988_010 Hb_002759_270 Hb_002759_270 Hb_008864_020--Hb_002759_270 Hb_126711_010 Hb_126711_010 Hb_008864_020--Hb_126711_010 Hb_000062_200 Hb_000062_200 Hb_008864_020--Hb_000062_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.114247 0.252223 0.249545 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.302947 0 0

CAGE analysis