Hb_008864_100

Information

Type -
Description -
Location Contig8864: 79799-84941
Sequence    

Annotation

kegg
ID rcu:RCOM_0938360
description hypothetical protein
nr
ID XP_012069414.1
description PREDICTED: uncharacterized protein LOC105631832 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RZD7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0938360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61512: 79476-79837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008864_100 0.0 - - PREDICTED: uncharacterized protein LOC105631832 isoform X1 [Jatropha curcas]
2 Hb_006289_020 0.175559012 - - PREDICTED: shugoshin-1 isoform X1 [Jatropha curcas]
3 Hb_003119_040 0.1853494033 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
4 Hb_012092_100 0.1998506299 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003878_060 0.2032563739 - - hypothetical protein B456_007G326900, partial [Gossypium raimondii]
6 Hb_000236_480 0.2145782574 - - PREDICTED: cytochrome P450 CYP72A219-like [Jatropha curcas]
7 Hb_000260_610 0.217596943 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
8 Hb_006060_010 0.2242900623 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
9 Hb_000193_060 0.2279681403 - - PREDICTED: F-box protein At4g35930 [Jatropha curcas]
10 Hb_001565_090 0.2293724159 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
11 Hb_006153_010 0.2321530582 - - PREDICTED: monocopper oxidase-like protein SKU5 [Populus euphratica]
12 Hb_005276_030 0.2324527932 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
13 Hb_005332_130 0.2364662526 - - Mavicyanin, putative [Ricinus communis]
14 Hb_000010_300 0.2364891376 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
15 Hb_032202_130 0.2365104276 - - PREDICTED: uncharacterized protein LOC105643062 [Jatropha curcas]
16 Hb_004884_170 0.2369705433 - - hypothetical protein AALP_AA1G067000 [Arabis alpina]
17 Hb_004452_090 0.2382085491 - - hypothetical protein JCGZ_12231 [Jatropha curcas]
18 Hb_000007_380 0.239241333 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
19 Hb_003712_010 0.2452355439 - - protein binding protein, putative [Ricinus communis]
20 Hb_001699_120 0.2455913269 - - Protein P21, putative [Ricinus communis]

Gene co-expression network

sample Hb_008864_100 Hb_008864_100 Hb_006289_020 Hb_006289_020 Hb_008864_100--Hb_006289_020 Hb_003119_040 Hb_003119_040 Hb_008864_100--Hb_003119_040 Hb_012092_100 Hb_012092_100 Hb_008864_100--Hb_012092_100 Hb_003878_060 Hb_003878_060 Hb_008864_100--Hb_003878_060 Hb_000236_480 Hb_000236_480 Hb_008864_100--Hb_000236_480 Hb_000260_610 Hb_000260_610 Hb_008864_100--Hb_000260_610 Hb_002965_160 Hb_002965_160 Hb_006289_020--Hb_002965_160 Hb_006289_020--Hb_003878_060 Hb_006289_020--Hb_000236_480 Hb_008725_070 Hb_008725_070 Hb_006289_020--Hb_008725_070 Hb_000960_090 Hb_000960_090 Hb_006289_020--Hb_000960_090 Hb_000288_090 Hb_000288_090 Hb_006289_020--Hb_000288_090 Hb_000193_060 Hb_000193_060 Hb_003119_040--Hb_000193_060 Hb_006060_010 Hb_006060_010 Hb_003119_040--Hb_006060_010 Hb_002048_100 Hb_002048_100 Hb_003119_040--Hb_002048_100 Hb_006153_010 Hb_006153_010 Hb_003119_040--Hb_006153_010 Hb_005599_010 Hb_005599_010 Hb_003119_040--Hb_005599_010 Hb_004154_010 Hb_004154_010 Hb_003119_040--Hb_004154_010 Hb_000925_040 Hb_000925_040 Hb_012092_100--Hb_000925_040 Hb_002631_190 Hb_002631_190 Hb_012092_100--Hb_002631_190 Hb_000010_300 Hb_000010_300 Hb_012092_100--Hb_000010_300 Hb_006472_070 Hb_006472_070 Hb_012092_100--Hb_006472_070 Hb_012092_100--Hb_006289_020 Hb_003878_060--Hb_006060_010 Hb_003599_060 Hb_003599_060 Hb_003878_060--Hb_003599_060 Hb_014497_070 Hb_014497_070 Hb_003878_060--Hb_014497_070 Hb_012753_150 Hb_012753_150 Hb_003878_060--Hb_012753_150 Hb_007474_020 Hb_007474_020 Hb_003878_060--Hb_007474_020 Hb_004452_090 Hb_004452_090 Hb_000236_480--Hb_004452_090 Hb_000031_300 Hb_000031_300 Hb_000236_480--Hb_000031_300 Hb_001541_190 Hb_001541_190 Hb_000236_480--Hb_001541_190 Hb_000236_480--Hb_006060_010 Hb_000020_080 Hb_000020_080 Hb_000236_480--Hb_000020_080 Hb_013344_010 Hb_013344_010 Hb_000260_610--Hb_013344_010 Hb_000260_610--Hb_006060_010 Hb_007545_110 Hb_007545_110 Hb_000260_610--Hb_007545_110 Hb_002400_050 Hb_002400_050 Hb_000260_610--Hb_002400_050 Hb_003667_020 Hb_003667_020 Hb_000260_610--Hb_003667_020 Hb_004920_050 Hb_004920_050 Hb_000260_610--Hb_004920_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0832479 0.228068 0.924691 0.694022 0.0201853 0.0188764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0192867 0.145989 0.107503 0

CAGE analysis