Hb_000982_140

Information

Type -
Description -
Location Contig982: 201389-201975
Sequence    

Annotation

kegg
ID rcu:RCOM_1722850
description histidine kinase 1 plant, putative
nr
ID XP_002521153.1
description histidine kinase 1 plant, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S584
description Histidine kinase 1 plant, putative OS=Ricinus communis GN=RCOM_1722850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000982_140 0.0 - - histidine kinase 1 plant, putative [Ricinus communis]
2 Hb_000197_300 0.2864916447 - - dehydrin protein [Manihot esculenta]
3 Hb_000803_140 0.288722588 - - PREDICTED: glucan endo-1,3-beta-glucosidase-like [Populus euphratica]
4 Hb_171065_010 0.3106509814 - - Ribonuclease H protein [Theobroma cacao]
5 Hb_000590_030 0.3681490386 - - conserved hypothetical protein [Ricinus communis]
6 Hb_134015_010 0.3777767428 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
7 Hb_000060_120 0.3778895156 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
8 Hb_000160_030 0.3868844541 - - putative S-adenosylmethionine-dependent methyltransferase [Morus notabilis]
9 Hb_001342_050 0.38835272 - - -
10 Hb_000419_090 0.395013508 - - hypothetical protein JCGZ_18532 [Jatropha curcas]
11 Hb_127704_010 0.3975982151 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_003688_170 0.4002834684 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
13 Hb_086639_130 0.4018624544 - - -
14 Hb_002644_030 0.4063857511 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like, partial [Eucalyptus grandis]
15 Hb_007547_030 0.4098829751 - - vacuolar sorting receptor family protein [Populus trichocarpa]
16 Hb_011063_020 0.4126116207 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
17 Hb_001369_380 0.4138001582 - - F-box family protein, putative [Theobroma cacao]
18 Hb_005599_060 0.4165424069 - - PREDICTED: syntaxin-72 isoform X1 [Jatropha curcas]
19 Hb_000107_470 0.4167783878 - - cellulose synthase, putative [Ricinus communis]
20 Hb_002053_120 0.420064936 transcription factor TF Family: CSD PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]

Gene co-expression network

sample Hb_000982_140 Hb_000982_140 Hb_000197_300 Hb_000197_300 Hb_000982_140--Hb_000197_300 Hb_000803_140 Hb_000803_140 Hb_000982_140--Hb_000803_140 Hb_171065_010 Hb_171065_010 Hb_000982_140--Hb_171065_010 Hb_000590_030 Hb_000590_030 Hb_000982_140--Hb_000590_030 Hb_134015_010 Hb_134015_010 Hb_000982_140--Hb_134015_010 Hb_000060_120 Hb_000060_120 Hb_000982_140--Hb_000060_120 Hb_153365_010 Hb_153365_010 Hb_000197_300--Hb_153365_010 Hb_005714_110 Hb_005714_110 Hb_000197_300--Hb_005714_110 Hb_043674_060 Hb_043674_060 Hb_000197_300--Hb_043674_060 Hb_004108_030 Hb_004108_030 Hb_000197_300--Hb_004108_030 Hb_052983_010 Hb_052983_010 Hb_000197_300--Hb_052983_010 Hb_003494_010 Hb_003494_010 Hb_000803_140--Hb_003494_010 Hb_034589_010 Hb_034589_010 Hb_000803_140--Hb_034589_010 Hb_002447_020 Hb_002447_020 Hb_000803_140--Hb_002447_020 Hb_104812_020 Hb_104812_020 Hb_000803_140--Hb_104812_020 Hb_000107_470 Hb_000107_470 Hb_000803_140--Hb_000107_470 Hb_001342_050 Hb_001342_050 Hb_171065_010--Hb_001342_050 Hb_003581_190 Hb_003581_190 Hb_171065_010--Hb_003581_190 Hb_004881_100 Hb_004881_100 Hb_171065_010--Hb_004881_100 Hb_171065_010--Hb_134015_010 Hb_006726_010 Hb_006726_010 Hb_171065_010--Hb_006726_010 Hb_000099_220 Hb_000099_220 Hb_000590_030--Hb_000099_220 Hb_011063_020 Hb_011063_020 Hb_000590_030--Hb_011063_020 Hb_024404_010 Hb_024404_010 Hb_000590_030--Hb_024404_010 Hb_000160_030 Hb_000160_030 Hb_000590_030--Hb_000160_030 Hb_002450_110 Hb_002450_110 Hb_000590_030--Hb_002450_110 Hb_003768_040 Hb_003768_040 Hb_000590_030--Hb_003768_040 Hb_002311_060 Hb_002311_060 Hb_134015_010--Hb_002311_060 Hb_004228_090 Hb_004228_090 Hb_134015_010--Hb_004228_090 Hb_021576_020 Hb_021576_020 Hb_134015_010--Hb_021576_020 Hb_000080_160 Hb_000080_160 Hb_134015_010--Hb_000080_160 Hb_079751_010 Hb_079751_010 Hb_134015_010--Hb_079751_010 Hb_032717_070 Hb_032717_070 Hb_134015_010--Hb_032717_070 Hb_000419_090 Hb_000419_090 Hb_000060_120--Hb_000419_090 Hb_172112_010 Hb_172112_010 Hb_000060_120--Hb_172112_010 Hb_178607_010 Hb_178607_010 Hb_000060_120--Hb_178607_010 Hb_086639_130 Hb_086639_130 Hb_000060_120--Hb_086639_130 Hb_002644_030 Hb_002644_030 Hb_000060_120--Hb_002644_030 Hb_159555_010 Hb_159555_010 Hb_000060_120--Hb_159555_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0666582 0 0.11068 0.0845844 0.255604 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.40888 0 0

CAGE analysis