Hb_000060_120

Information

Type -
Description -
Location Contig60: 136788-138909
Sequence    

Annotation

kegg
ID pop:POPTR_0004s06050g
description POPTRDRAFT_855146; hypothetical protein
nr
ID XP_011010908.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
swissprot
ID Q8RWZ5
description G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1
trembl
ID B9H2E2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s06050g PE=4 SV=2
Gene Ontology
ID GO:0000166
description g-type lectin s-receptor-like serine threonine-protein kinase sd2-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000060_120 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
2 Hb_000419_090 0.3180106675 - - hypothetical protein JCGZ_18532 [Jatropha curcas]
3 Hb_172112_010 0.3213532629 - - hypothetical protein JCGZ_26322 [Jatropha curcas]
4 Hb_178607_010 0.3359874766 - - PREDICTED: uncharacterized protein LOC105789535 [Gossypium raimondii]
5 Hb_086639_130 0.3544908715 - - -
6 Hb_002644_030 0.3586949833 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like, partial [Eucalyptus grandis]
7 Hb_159555_010 0.3618004051 - - PREDICTED: uncharacterized protein LOC105795953 [Gossypium raimondii]
8 Hb_010317_020 0.3626488179 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
9 Hb_137153_010 0.3676813664 - - -
10 Hb_098466_010 0.3744602136 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
11 Hb_003581_190 0.377191837 transcription factor TF Family: ERF hypothetical protein JCGZ_21694 [Jatropha curcas]
12 Hb_000982_140 0.3778895156 - - histidine kinase 1 plant, putative [Ricinus communis]
13 Hb_067188_010 0.3796603471 - - -
14 Hb_000590_040 0.3845885055 - - hypothetical protein MPER_09217 [Moniliophthora perniciosa FA553]
15 Hb_002053_120 0.3876719755 transcription factor TF Family: CSD PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]
16 Hb_031136_020 0.3888881034 - - -
17 Hb_000340_090 0.3890812121 - - -
18 Hb_001342_050 0.3943836319 - - -
19 Hb_099864_010 0.3993846437 - - Disease resistance protein RPM1, putative [Ricinus communis]
20 Hb_171065_010 0.4008256505 - - Ribonuclease H protein [Theobroma cacao]

Gene co-expression network

sample Hb_000060_120 Hb_000060_120 Hb_000419_090 Hb_000419_090 Hb_000060_120--Hb_000419_090 Hb_172112_010 Hb_172112_010 Hb_000060_120--Hb_172112_010 Hb_178607_010 Hb_178607_010 Hb_000060_120--Hb_178607_010 Hb_086639_130 Hb_086639_130 Hb_000060_120--Hb_086639_130 Hb_002644_030 Hb_002644_030 Hb_000060_120--Hb_002644_030 Hb_159555_010 Hb_159555_010 Hb_000060_120--Hb_159555_010 Hb_000419_090--Hb_172112_010 Hb_000419_090--Hb_178607_010 Hb_005488_110 Hb_005488_110 Hb_000419_090--Hb_005488_110 Hb_000419_090--Hb_086639_130 Hb_137153_010 Hb_137153_010 Hb_000419_090--Hb_137153_010 Hb_001650_010 Hb_001650_010 Hb_172112_010--Hb_001650_010 Hb_098466_010 Hb_098466_010 Hb_172112_010--Hb_098466_010 Hb_172112_010--Hb_137153_010 Hb_172112_010--Hb_178607_010 Hb_005656_060 Hb_005656_060 Hb_172112_010--Hb_005656_060 Hb_025457_010 Hb_025457_010 Hb_178607_010--Hb_025457_010 Hb_000590_040 Hb_000590_040 Hb_178607_010--Hb_000590_040 Hb_010317_020 Hb_010317_020 Hb_178607_010--Hb_010317_020 Hb_067188_010 Hb_067188_010 Hb_178607_010--Hb_067188_010 Hb_002232_450 Hb_002232_450 Hb_178607_010--Hb_002232_450 Hb_002053_120 Hb_002053_120 Hb_086639_130--Hb_002053_120 Hb_031136_020 Hb_031136_020 Hb_086639_130--Hb_031136_020 Hb_000340_090 Hb_000340_090 Hb_086639_130--Hb_000340_090 Hb_010435_020 Hb_010435_020 Hb_086639_130--Hb_010435_020 Hb_000483_210 Hb_000483_210 Hb_086639_130--Hb_000483_210 Hb_000427_120 Hb_000427_120 Hb_086639_130--Hb_000427_120 Hb_001506_010 Hb_001506_010 Hb_002644_030--Hb_001506_010 Hb_000331_150 Hb_000331_150 Hb_002644_030--Hb_000331_150 Hb_000115_300 Hb_000115_300 Hb_002644_030--Hb_000115_300 Hb_004881_100 Hb_004881_100 Hb_002644_030--Hb_004881_100 Hb_000504_080 Hb_000504_080 Hb_002644_030--Hb_000504_080 Hb_002644_030--Hb_067188_010 Hb_159555_010--Hb_010317_020 Hb_009973_020 Hb_009973_020 Hb_159555_010--Hb_009973_020 Hb_005081_040 Hb_005081_040 Hb_159555_010--Hb_005081_040 Hb_049483_010 Hb_049483_010 Hb_159555_010--Hb_049483_010 Hb_023323_010 Hb_023323_010 Hb_159555_010--Hb_023323_010 Hb_012181_010 Hb_012181_010 Hb_159555_010--Hb_012181_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00916561 0 0.0346347 0.0108035
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0416223 0 0

CAGE analysis