Hb_010435_020

Information

Type -
Description -
Location Contig10435: 14374-18665
Sequence    

Annotation

kegg
ID cmo:103497645
description uncharacterized LOC103497645
nr
ID XP_009765336.1
description PREDICTED: uncharacterized protein LOC104216897 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A061EVY9
description Uncharacterized protein OS=Theobroma cacao GN=TCM_024023 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010435_020 0.0 - - PREDICTED: uncharacterized protein LOC104216897 [Nicotiana sylvestris]
2 Hb_000427_120 0.0792293465 - - -
3 Hb_000340_090 0.1056510888 - - -
4 Hb_031136_020 0.1060575973 - - -
5 Hb_002053_120 0.1086300638 transcription factor TF Family: CSD PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]
6 Hb_086639_130 0.1924773558 - - -
7 Hb_061637_010 0.2215103858 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
8 Hb_021156_030 0.2327859454 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
9 Hb_000038_190 0.2598724163 - - -
10 Hb_000046_150 0.2598724163 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000047_120 0.2598724163 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000062_120 0.2598724163 - - hypothetical protein JCGZ_17895 [Jatropha curcas]
13 Hb_000094_140 0.2598724163 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
14 Hb_000100_080 0.2598724163 - - -
15 Hb_000120_830 0.2598724163 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
16 Hb_000134_060 0.2598724163 - - PREDICTED: LOW QUALITY PROTEIN: extended synaptotagmin-1-like [Jatropha curcas]
17 Hb_000173_450 0.2598724163 - - -
18 Hb_000175_170 0.2598724163 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
19 Hb_000181_170 0.2598724163 - - hypothetical protein POPTR_0011s11750g [Populus trichocarpa]
20 Hb_000298_040 0.2598724163 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_010435_020 Hb_010435_020 Hb_000427_120 Hb_000427_120 Hb_010435_020--Hb_000427_120 Hb_000340_090 Hb_000340_090 Hb_010435_020--Hb_000340_090 Hb_031136_020 Hb_031136_020 Hb_010435_020--Hb_031136_020 Hb_002053_120 Hb_002053_120 Hb_010435_020--Hb_002053_120 Hb_086639_130 Hb_086639_130 Hb_010435_020--Hb_086639_130 Hb_061637_010 Hb_061637_010 Hb_010435_020--Hb_061637_010 Hb_000427_120--Hb_000340_090 Hb_000427_120--Hb_031136_020 Hb_000427_120--Hb_002053_120 Hb_000427_120--Hb_061637_010 Hb_021156_030 Hb_021156_030 Hb_000427_120--Hb_021156_030 Hb_000340_090--Hb_031136_020 Hb_000340_090--Hb_002053_120 Hb_000340_090--Hb_086639_130 Hb_000483_210 Hb_000483_210 Hb_000340_090--Hb_000483_210 Hb_031136_020--Hb_002053_120 Hb_031136_020--Hb_086639_130 Hb_031136_020--Hb_000483_210 Hb_002053_120--Hb_086639_130 Hb_002053_120--Hb_000483_210 Hb_086639_130--Hb_000483_210 Hb_086639_130--Hb_000427_120 Hb_007177_010 Hb_007177_010 Hb_061637_010--Hb_007177_010 Hb_000572_050 Hb_000572_050 Hb_061637_010--Hb_000572_050 Hb_005841_030 Hb_005841_030 Hb_061637_010--Hb_005841_030 Hb_005142_010 Hb_005142_010 Hb_061637_010--Hb_005142_010 Hb_001403_030 Hb_001403_030 Hb_061637_010--Hb_001403_030 Hb_000971_060 Hb_000971_060 Hb_061637_010--Hb_000971_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0100384 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0679725 0 0

CAGE analysis