Hb_000483_210

Information

Type -
Description -
Location Contig483: 180913-184486
Sequence    

Annotation

kegg
ID rcu:RCOM_0121080
description Rhicadhesin receptor precursor, putative (EC:1.15.1.1)
nr
ID KDP39966.1
description hypothetical protein JCGZ_03497 [Jatropha curcas]
swissprot
ID Q652P9
description Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1
trembl
ID A0A067KUS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03497 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein 9-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_210 0.0 - - hypothetical protein JCGZ_03497 [Jatropha curcas]
2 Hb_000115_300 0.2438673978 - - -
3 Hb_086639_130 0.2545067264 - - -
4 Hb_001477_140 0.2580635536 - - o-methyltransferase, putative [Ricinus communis]
5 Hb_002053_120 0.2790195507 transcription factor TF Family: CSD PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]
6 Hb_031136_020 0.2801087659 - - -
7 Hb_000340_090 0.280282471 - - -
8 Hb_178607_010 0.32991142 - - PREDICTED: uncharacterized protein LOC105789535 [Gossypium raimondii]
9 Hb_002184_100 0.3320540358 - - hypothetical protein PRUPE_ppa020120mg [Prunus persica]
10 Hb_010435_020 0.337167112 - - PREDICTED: uncharacterized protein LOC104216897 [Nicotiana sylvestris]
11 Hb_008370_010 0.3375062784 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_061637_010 0.3448902772 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
13 Hb_006806_010 0.3482022512 - - -
14 Hb_171065_010 0.3550449402 - - Ribonuclease H protein [Theobroma cacao]
15 Hb_161929_010 0.3644618729 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
16 Hb_002644_030 0.3675481629 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like, partial [Eucalyptus grandis]
17 Hb_002289_130 0.3682302247 transcription factor TF Family: C2H2 arsenite inducuble RNA associated protein aip-1, putative [Ricinus communis]
18 Hb_004881_100 0.3704199581 - - Phosphoribosyltransferase family protein isoform 4 [Theobroma cacao]
19 Hb_089173_010 0.3755898245 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
20 Hb_001342_050 0.3770652677 - - -

Gene co-expression network

sample Hb_000483_210 Hb_000483_210 Hb_000115_300 Hb_000115_300 Hb_000483_210--Hb_000115_300 Hb_086639_130 Hb_086639_130 Hb_000483_210--Hb_086639_130 Hb_001477_140 Hb_001477_140 Hb_000483_210--Hb_001477_140 Hb_002053_120 Hb_002053_120 Hb_000483_210--Hb_002053_120 Hb_031136_020 Hb_031136_020 Hb_000483_210--Hb_031136_020 Hb_000340_090 Hb_000340_090 Hb_000483_210--Hb_000340_090 Hb_003589_070 Hb_003589_070 Hb_000115_300--Hb_003589_070 Hb_002184_100 Hb_002184_100 Hb_000115_300--Hb_002184_100 Hb_002644_030 Hb_002644_030 Hb_000115_300--Hb_002644_030 Hb_004881_100 Hb_004881_100 Hb_000115_300--Hb_004881_100 Hb_178607_010 Hb_178607_010 Hb_000115_300--Hb_178607_010 Hb_086639_130--Hb_002053_120 Hb_086639_130--Hb_031136_020 Hb_086639_130--Hb_000340_090 Hb_010435_020 Hb_010435_020 Hb_086639_130--Hb_010435_020 Hb_000427_120 Hb_000427_120 Hb_086639_130--Hb_000427_120 Hb_061637_010 Hb_061637_010 Hb_001477_140--Hb_061637_010 Hb_161929_010 Hb_161929_010 Hb_001477_140--Hb_161929_010 Hb_002522_020 Hb_002522_020 Hb_001477_140--Hb_002522_020 Hb_001477_140--Hb_010435_020 Hb_074238_010 Hb_074238_010 Hb_001477_140--Hb_074238_010 Hb_002053_120--Hb_031136_020 Hb_002053_120--Hb_000340_090 Hb_002053_120--Hb_010435_020 Hb_002053_120--Hb_000427_120 Hb_031136_020--Hb_000340_090 Hb_031136_020--Hb_010435_020 Hb_031136_020--Hb_000427_120 Hb_000340_090--Hb_010435_020 Hb_000340_090--Hb_000427_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0314221 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.056154 0.0120523 0

CAGE analysis