Hb_161929_010

Information

Type -
Description -
Location Contig161929: 293-1007
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012092674.1
description PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161929_010 0.0 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
2 Hb_008370_010 0.2306549999 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_001477_140 0.2523331397 - - o-methyltransferase, putative [Ricinus communis]
4 Hb_005532_010 0.2523787091 - - -
5 Hb_003760_040 0.2607924311 - - organic anion transporter, putative [Ricinus communis]
6 Hb_005483_010 0.2732948739 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
7 Hb_021616_010 0.2737223454 - - -
8 Hb_009421_010 0.2995614277 - - -
9 Hb_061637_010 0.300208596 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
10 Hb_000638_040 0.3080215871 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max]
11 Hb_006806_010 0.3095220608 - - -
12 Hb_010142_080 0.3121580811 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
13 Hb_002513_030 0.3123883937 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
14 Hb_006355_050 0.3155533878 - - -
15 Hb_003446_040 0.3165372915 - - -
16 Hb_090826_010 0.319668513 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
17 Hb_030928_010 0.31967419 - - -
18 Hb_181535_010 0.319680333 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_000351_030 0.3197114664 - - putative NBS-LRR type disease resistance protein [Prunus persica]
20 Hb_139388_010 0.3197168089 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_161929_010 Hb_161929_010 Hb_008370_010 Hb_008370_010 Hb_161929_010--Hb_008370_010 Hb_001477_140 Hb_001477_140 Hb_161929_010--Hb_001477_140 Hb_005532_010 Hb_005532_010 Hb_161929_010--Hb_005532_010 Hb_003760_040 Hb_003760_040 Hb_161929_010--Hb_003760_040 Hb_005483_010 Hb_005483_010 Hb_161929_010--Hb_005483_010 Hb_021616_010 Hb_021616_010 Hb_161929_010--Hb_021616_010 Hb_009421_010 Hb_009421_010 Hb_008370_010--Hb_009421_010 Hb_008370_010--Hb_005532_010 Hb_008370_010--Hb_021616_010 Hb_010142_080 Hb_010142_080 Hb_008370_010--Hb_010142_080 Hb_089173_010 Hb_089173_010 Hb_008370_010--Hb_089173_010 Hb_061637_010 Hb_061637_010 Hb_001477_140--Hb_061637_010 Hb_000483_210 Hb_000483_210 Hb_001477_140--Hb_000483_210 Hb_002522_020 Hb_002522_020 Hb_001477_140--Hb_002522_020 Hb_010435_020 Hb_010435_020 Hb_001477_140--Hb_010435_020 Hb_074238_010 Hb_074238_010 Hb_001477_140--Hb_074238_010 Hb_062244_010 Hb_062244_010 Hb_005532_010--Hb_062244_010 Hb_005532_010--Hb_010142_080 Hb_005532_010--Hb_021616_010 Hb_005532_010--Hb_009421_010 Hb_004413_030 Hb_004413_030 Hb_005532_010--Hb_004413_030 Hb_005532_010--Hb_005483_010 Hb_003760_040--Hb_005483_010 Hb_003760_040--Hb_021616_010 Hb_002513_030 Hb_002513_030 Hb_003760_040--Hb_002513_030 Hb_003760_040--Hb_010142_080 Hb_003446_040 Hb_003446_040 Hb_003760_040--Hb_003446_040 Hb_012286_070 Hb_012286_070 Hb_005483_010--Hb_012286_070 Hb_000450_140 Hb_000450_140 Hb_005483_010--Hb_000450_140 Hb_020818_010 Hb_020818_010 Hb_005483_010--Hb_020818_010 Hb_070247_010 Hb_070247_010 Hb_005483_010--Hb_070247_010 Hb_010760_010 Hb_010760_010 Hb_005483_010--Hb_010760_010 Hb_001545_250 Hb_001545_250 Hb_005483_010--Hb_001545_250 Hb_021616_010--Hb_005483_010 Hb_021616_010--Hb_010142_080 Hb_174876_010 Hb_174876_010 Hb_021616_010--Hb_174876_010 Hb_013429_020 Hb_013429_020 Hb_021616_010--Hb_013429_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0332561 0.0319458 0.0301786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.331403 0.0753204 0

CAGE analysis