Hb_062244_010

Information

Type -
Description -
Location Contig62244: 14737-19360
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062244_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_135624_010 0.1220945317 - - PREDICTED: inositol transporter 4-like [Jatropha curcas]
3 Hb_005532_010 0.1621083336 - - -
4 Hb_004413_030 0.1731907223 - - Retrotransposon protein, putative [Theobroma cacao]
5 Hb_001009_130 0.1980085703 - - hypothetical protein JCGZ_11336 [Jatropha curcas]
6 Hb_010142_080 0.230266096 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
7 Hb_021616_010 0.257744475 - - -
8 Hb_005483_010 0.2688010281 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
9 Hb_000144_140 0.275853016 - - PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]
10 Hb_005020_010 0.2848591777 - - -
11 Hb_003446_040 0.2877061631 - - -
12 Hb_001534_170 0.2979711847 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
13 Hb_009421_010 0.300540558 - - -
14 Hb_007177_010 0.303573787 - - -
15 Hb_000042_190 0.3055063476 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006806_010 0.3125931716 - - -
17 Hb_000083_040 0.3182404544 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010417_010 0.3224789582 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
19 Hb_052983_010 0.3229576614 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_001545_210 0.3233230088 - - hypothetical protein JCGZ_11132 [Jatropha curcas]

Gene co-expression network

sample Hb_062244_010 Hb_062244_010 Hb_135624_010 Hb_135624_010 Hb_062244_010--Hb_135624_010 Hb_005532_010 Hb_005532_010 Hb_062244_010--Hb_005532_010 Hb_004413_030 Hb_004413_030 Hb_062244_010--Hb_004413_030 Hb_001009_130 Hb_001009_130 Hb_062244_010--Hb_001009_130 Hb_010142_080 Hb_010142_080 Hb_062244_010--Hb_010142_080 Hb_021616_010 Hb_021616_010 Hb_062244_010--Hb_021616_010 Hb_135624_010--Hb_004413_030 Hb_135624_010--Hb_001009_130 Hb_135624_010--Hb_005532_010 Hb_000144_140 Hb_000144_140 Hb_135624_010--Hb_000144_140 Hb_006344_010 Hb_006344_010 Hb_135624_010--Hb_006344_010 Hb_005532_010--Hb_010142_080 Hb_005532_010--Hb_021616_010 Hb_009421_010 Hb_009421_010 Hb_005532_010--Hb_009421_010 Hb_005532_010--Hb_004413_030 Hb_005483_010 Hb_005483_010 Hb_005532_010--Hb_005483_010 Hb_004413_030--Hb_001009_130 Hb_003446_040 Hb_003446_040 Hb_004413_030--Hb_003446_040 Hb_001277_310 Hb_001277_310 Hb_004413_030--Hb_001277_310 Hb_001009_130--Hb_000144_140 Hb_001009_130--Hb_001277_310 Hb_001009_130--Hb_003446_040 Hb_010142_080--Hb_009421_010 Hb_010142_080--Hb_021616_010 Hb_003226_290 Hb_003226_290 Hb_010142_080--Hb_003226_290 Hb_010142_080--Hb_004413_030 Hb_013429_020 Hb_013429_020 Hb_010142_080--Hb_013429_020 Hb_021616_010--Hb_005483_010 Hb_174876_010 Hb_174876_010 Hb_021616_010--Hb_174876_010 Hb_021616_010--Hb_013429_020 Hb_008370_010 Hb_008370_010 Hb_021616_010--Hb_008370_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00562969 0 0 0 0 0.00397581
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0312123 0.00643192 0

CAGE analysis