Hb_178607_010

Information

Type -
Description -
Location Contig178607: 30-881
Sequence    

Annotation

kegg
ID vvi:104879739
description uncharacterized LOC104879739
nr
ID XP_012472362.1
description PREDICTED: uncharacterized protein LOC105789535 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID M5XQI2
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023790mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178607_010 0.0 - - PREDICTED: uncharacterized protein LOC105789535 [Gossypium raimondii]
2 Hb_172112_010 0.2586142504 - - hypothetical protein JCGZ_26322 [Jatropha curcas]
3 Hb_025457_010 0.304511399 - - -
4 Hb_000590_040 0.3062730258 - - hypothetical protein MPER_09217 [Moniliophthora perniciosa FA553]
5 Hb_010317_020 0.3099944132 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
6 Hb_067188_010 0.3111033161 - - -
7 Hb_002232_450 0.3133102112 - - PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
8 Hb_008370_010 0.3147536946 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000483_210 0.32991142 - - hypothetical protein JCGZ_03497 [Jatropha curcas]
10 Hb_002028_100 0.333052427 - - PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
11 Hb_000060_120 0.3359874766 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
12 Hb_000038_030 0.3373172256 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]
13 Hb_001506_010 0.3411453535 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
14 Hb_000042_140 0.3418816368 - - hypothetical protein POPTR_0001s41640g, partial [Populus trichocarpa]
15 Hb_000419_090 0.3444154281 - - hypothetical protein JCGZ_18532 [Jatropha curcas]
16 Hb_002733_030 0.3451316721 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
17 Hb_098466_010 0.3475865163 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
18 Hb_000331_150 0.3512953377 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_015707_010 0.3527166962 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
20 Hb_003581_190 0.3581958067 transcription factor TF Family: ERF hypothetical protein JCGZ_21694 [Jatropha curcas]

Gene co-expression network

sample Hb_178607_010 Hb_178607_010 Hb_172112_010 Hb_172112_010 Hb_178607_010--Hb_172112_010 Hb_025457_010 Hb_025457_010 Hb_178607_010--Hb_025457_010 Hb_000590_040 Hb_000590_040 Hb_178607_010--Hb_000590_040 Hb_010317_020 Hb_010317_020 Hb_178607_010--Hb_010317_020 Hb_067188_010 Hb_067188_010 Hb_178607_010--Hb_067188_010 Hb_002232_450 Hb_002232_450 Hb_178607_010--Hb_002232_450 Hb_001650_010 Hb_001650_010 Hb_172112_010--Hb_001650_010 Hb_098466_010 Hb_098466_010 Hb_172112_010--Hb_098466_010 Hb_137153_010 Hb_137153_010 Hb_172112_010--Hb_137153_010 Hb_005656_060 Hb_005656_060 Hb_172112_010--Hb_005656_060 Hb_000060_120 Hb_000060_120 Hb_172112_010--Hb_000060_120 Hb_002733_030 Hb_002733_030 Hb_025457_010--Hb_002733_030 Hb_009421_010 Hb_009421_010 Hb_025457_010--Hb_009421_010 Hb_097968_010 Hb_097968_010 Hb_025457_010--Hb_097968_010 Hb_025457_010--Hb_002232_450 Hb_002686_380 Hb_002686_380 Hb_025457_010--Hb_002686_380 Hb_008370_010 Hb_008370_010 Hb_025457_010--Hb_008370_010 Hb_003540_130 Hb_003540_130 Hb_000590_040--Hb_003540_130 Hb_000331_150 Hb_000331_150 Hb_000590_040--Hb_000331_150 Hb_003069_020 Hb_003069_020 Hb_000590_040--Hb_003069_020 Hb_004324_350 Hb_004324_350 Hb_000590_040--Hb_004324_350 Hb_002028_100 Hb_002028_100 Hb_000590_040--Hb_002028_100 Hb_000590_040--Hb_067188_010 Hb_159555_010 Hb_159555_010 Hb_010317_020--Hb_159555_010 Hb_001506_010 Hb_001506_010 Hb_010317_020--Hb_001506_010 Hb_000101_160 Hb_000101_160 Hb_010317_020--Hb_000101_160 Hb_001678_020 Hb_001678_020 Hb_010317_020--Hb_001678_020 Hb_010317_020--Hb_005656_060 Hb_003881_050 Hb_003881_050 Hb_010317_020--Hb_003881_050 Hb_000038_030 Hb_000038_030 Hb_067188_010--Hb_000038_030 Hb_067188_010--Hb_004324_350 Hb_099864_010 Hb_099864_010 Hb_067188_010--Hb_099864_010 Hb_004306_070 Hb_004306_070 Hb_067188_010--Hb_004306_070 Hb_067188_010--Hb_000331_150 Hb_022148_010 Hb_022148_010 Hb_067188_010--Hb_022148_010 Hb_002232_450--Hb_002028_100 Hb_002232_450--Hb_002733_030 Hb_000012_300 Hb_000012_300 Hb_002232_450--Hb_000012_300 Hb_015707_010 Hb_015707_010 Hb_002232_450--Hb_015707_010 Hb_002232_450--Hb_097968_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0840087 0.0638964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.137873 0.0322949 0

CAGE analysis