Hb_159555_010

Information

Type -
Description -
Location Contig159555: 278-1006
Sequence    

Annotation

kegg
ID tcc:TCM_036595
description hypothetical protein
nr
ID XP_012481053.1
description PREDICTED: uncharacterized protein LOC105795953 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061FJB0
description Uncharacterized protein OS=Theobroma cacao GN=TCM_036595 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159555_010 0.0 - - PREDICTED: uncharacterized protein LOC105795953 [Gossypium raimondii]
2 Hb_010317_020 0.1915133551 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
3 Hb_009973_020 0.2650397744 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
4 Hb_005081_040 0.276536813 - - -
5 Hb_049483_010 0.2913522445 - - leucyl-tRNA synthetase, putative [Ricinus communis]
6 Hb_023323_010 0.2965651687 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
7 Hb_012181_010 0.2990131316 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_001506_010 0.3005646808 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
9 Hb_006960_020 0.3048029937 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
10 Hb_002506_100 0.3108688145 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
11 Hb_000260_690 0.3157683022 - - disease resistance protein (CC-NBS-LRR class) family protein [Medicago truncatula]
12 Hb_000284_100 0.3185987689 - - PREDICTED: transcription factor GTE11 isoform X2 [Populus euphratica]
13 Hb_001678_020 0.3193548741 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
14 Hb_005989_010 0.3308529171 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
15 Hb_087340_010 0.3315887587 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007416_370 0.3363714986 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000101_160 0.3369132296 - - PREDICTED: uncharacterized protein LOC105133607 isoform X1 [Populus euphratica]
18 Hb_098466_010 0.3393464992 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
19 Hb_005656_060 0.3403051803 - - -
20 Hb_001135_280 0.3443674823 - - -

Gene co-expression network

sample Hb_159555_010 Hb_159555_010 Hb_010317_020 Hb_010317_020 Hb_159555_010--Hb_010317_020 Hb_009973_020 Hb_009973_020 Hb_159555_010--Hb_009973_020 Hb_005081_040 Hb_005081_040 Hb_159555_010--Hb_005081_040 Hb_049483_010 Hb_049483_010 Hb_159555_010--Hb_049483_010 Hb_023323_010 Hb_023323_010 Hb_159555_010--Hb_023323_010 Hb_012181_010 Hb_012181_010 Hb_159555_010--Hb_012181_010 Hb_001506_010 Hb_001506_010 Hb_010317_020--Hb_001506_010 Hb_000101_160 Hb_000101_160 Hb_010317_020--Hb_000101_160 Hb_001678_020 Hb_001678_020 Hb_010317_020--Hb_001678_020 Hb_005656_060 Hb_005656_060 Hb_010317_020--Hb_005656_060 Hb_003881_050 Hb_003881_050 Hb_010317_020--Hb_003881_050 Hb_047661_010 Hb_047661_010 Hb_009973_020--Hb_047661_010 Hb_005989_010 Hb_005989_010 Hb_009973_020--Hb_005989_010 Hb_009973_020--Hb_023323_010 Hb_021068_010 Hb_021068_010 Hb_009973_020--Hb_021068_010 Hb_009973_020--Hb_001678_020 Hb_028755_010 Hb_028755_010 Hb_005081_040--Hb_028755_010 Hb_005081_040--Hb_010317_020 Hb_005081_040--Hb_023323_010 Hb_005081_040--Hb_009973_020 Hb_005081_040--Hb_021068_010 Hb_007926_040 Hb_007926_040 Hb_049483_010--Hb_007926_040 Hb_007101_200 Hb_007101_200 Hb_049483_010--Hb_007101_200 Hb_022250_170 Hb_022250_170 Hb_049483_010--Hb_022250_170 Hb_000250_080 Hb_000250_080 Hb_049483_010--Hb_000250_080 Hb_008247_010 Hb_008247_010 Hb_049483_010--Hb_008247_010 Hb_007603_010 Hb_007603_010 Hb_049483_010--Hb_007603_010 Hb_023323_010--Hb_005989_010 Hb_023323_010--Hb_047661_010 Hb_023323_010--Hb_001678_020 Hb_000322_110 Hb_000322_110 Hb_023323_010--Hb_000322_110 Hb_023323_010--Hb_005656_060 Hb_000504_080 Hb_000504_080 Hb_012181_010--Hb_000504_080 Hb_007007_010 Hb_007007_010 Hb_012181_010--Hb_007007_010 Hb_004650_080 Hb_004650_080 Hb_012181_010--Hb_004650_080 Hb_000115_070 Hb_000115_070 Hb_012181_010--Hb_000115_070 Hb_000424_160 Hb_000424_160 Hb_012181_010--Hb_000424_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.033164 0 0.0781802 0 0.348931 0.248041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.215579 0.0244271 0.119521

CAGE analysis