Hb_010317_020

Information

Type -
Description -
Location Contig10317: 16902-18394
Sequence    

Annotation

kegg
ID gmx:100812351
description serine/arginine repetitive matrix protein 2-like
nr
ID XP_012077327.1
description PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
swissprot
ID Q9UQ35
description Serine/arginine repetitive matrix protein 2 OS=Homo sapiens GN=SRRM2 PE=1 SV=2
trembl
ID A0A067KD23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07697 PE=4 SV=1
Gene Ontology
ID GO:0032259
description serine arginine repetitive matrix protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01302: 16446-17364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010317_020 0.0 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
2 Hb_159555_010 0.1915133551 - - PREDICTED: uncharacterized protein LOC105795953 [Gossypium raimondii]
3 Hb_001506_010 0.2052234849 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
4 Hb_000101_160 0.2241584482 - - PREDICTED: uncharacterized protein LOC105133607 isoform X1 [Populus euphratica]
5 Hb_001678_020 0.2403471601 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
6 Hb_005656_060 0.2436221885 - - -
7 Hb_003881_050 0.2576612485 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
8 Hb_038011_010 0.2666884346 - - hypothetical protein POPTR_0031s004401g, partial [Populus trichocarpa]
9 Hb_000038_030 0.2684841484 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]
10 Hb_000260_690 0.2714704984 - - disease resistance protein (CC-NBS-LRR class) family protein [Medicago truncatula]
11 Hb_005867_080 0.2736735267 - - PREDICTED: protein NETWORKED 2A [Jatropha curcas]
12 Hb_002733_030 0.2783590999 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
13 Hb_090497_010 0.2791695157 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
14 Hb_006960_020 0.2802418824 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
15 Hb_000431_020 0.282609822 - - hypothetical protein JCGZ_06801 [Jatropha curcas]
16 Hb_067188_010 0.2827415184 - - -
17 Hb_002233_090 0.287140659 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
18 Hb_005081_040 0.2873478866 - - -
19 Hb_022288_020 0.2887831615 - - hypothetical protein POPTR_0006s08590g [Populus trichocarpa]
20 Hb_022148_010 0.2891498949 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]

Gene co-expression network

sample Hb_010317_020 Hb_010317_020 Hb_159555_010 Hb_159555_010 Hb_010317_020--Hb_159555_010 Hb_001506_010 Hb_001506_010 Hb_010317_020--Hb_001506_010 Hb_000101_160 Hb_000101_160 Hb_010317_020--Hb_000101_160 Hb_001678_020 Hb_001678_020 Hb_010317_020--Hb_001678_020 Hb_005656_060 Hb_005656_060 Hb_010317_020--Hb_005656_060 Hb_003881_050 Hb_003881_050 Hb_010317_020--Hb_003881_050 Hb_009973_020 Hb_009973_020 Hb_159555_010--Hb_009973_020 Hb_005081_040 Hb_005081_040 Hb_159555_010--Hb_005081_040 Hb_049483_010 Hb_049483_010 Hb_159555_010--Hb_049483_010 Hb_023323_010 Hb_023323_010 Hb_159555_010--Hb_023323_010 Hb_012181_010 Hb_012181_010 Hb_159555_010--Hb_012181_010 Hb_001506_010--Hb_000101_160 Hb_001506_010--Hb_001678_020 Hb_000038_030 Hb_000038_030 Hb_001506_010--Hb_000038_030 Hb_024404_010 Hb_024404_010 Hb_001506_010--Hb_024404_010 Hb_024505_050 Hb_024505_050 Hb_001506_010--Hb_024505_050 Hb_000101_160--Hb_001678_020 Hb_000857_050 Hb_000857_050 Hb_000101_160--Hb_000857_050 Hb_007603_010 Hb_007603_010 Hb_000101_160--Hb_007603_010 Hb_138600_010 Hb_138600_010 Hb_000101_160--Hb_138600_010 Hb_002233_090 Hb_002233_090 Hb_000101_160--Hb_002233_090 Hb_010620_010 Hb_010620_010 Hb_001678_020--Hb_010620_010 Hb_000103_360 Hb_000103_360 Hb_001678_020--Hb_000103_360 Hb_001678_020--Hb_023323_010 Hb_001678_020--Hb_002233_090 Hb_000384_040 Hb_000384_040 Hb_001678_020--Hb_000384_040 Hb_000457_160 Hb_000457_160 Hb_005656_060--Hb_000457_160 Hb_005867_080 Hb_005867_080 Hb_005656_060--Hb_005867_080 Hb_022288_020 Hb_022288_020 Hb_005656_060--Hb_022288_020 Hb_041774_010 Hb_041774_010 Hb_005656_060--Hb_041774_010 Hb_001767_020 Hb_001767_020 Hb_005656_060--Hb_001767_020 Hb_010317_030 Hb_010317_030 Hb_005656_060--Hb_010317_030 Hb_038011_010 Hb_038011_010 Hb_003881_050--Hb_038011_010 Hb_001242_090 Hb_001242_090 Hb_003881_050--Hb_001242_090 Hb_085863_020 Hb_085863_020 Hb_003881_050--Hb_085863_020 Hb_073452_010 Hb_073452_010 Hb_003881_050--Hb_073452_010 Hb_090497_010 Hb_090497_010 Hb_003881_050--Hb_090497_010 Hb_003688_160 Hb_003688_160 Hb_003881_050--Hb_003688_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.592 0 0.383196 0.179534 3.06382 2.76605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.9147 0.585799 0.46073

CAGE analysis