Hb_003589_070

Information

Type -
Description -
Location Contig3589: 64005-65518
Sequence    

Annotation

kegg
ID mtr:MTR_8g062180
description hypothetical protein
nr
ID XP_009795718.1
description PREDICTED: uncharacterized protein LOC104242373 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID G7LEL2
description Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula GN=MTR_8g062180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003589_070 0.0 - - PREDICTED: uncharacterized protein LOC104242373 [Nicotiana sylvestris]
2 Hb_002184_100 0.1955991839 - - hypothetical protein PRUPE_ppa020120mg [Prunus persica]
3 Hb_000115_300 0.2540807195 - - -
4 Hb_004117_300 0.3386964932 - - -
5 Hb_181476_010 0.3387198931 - - -
6 Hb_000917_140 0.3389050685 - - -
7 Hb_038005_010 0.3429757338 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
8 Hb_002120_020 0.3464217446 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
9 Hb_184484_010 0.3481828101 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_027846_010 0.3502523697 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
11 Hb_008779_010 0.3617132935 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
12 Hb_008643_010 0.3622546091 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
13 Hb_001549_030 0.3699953958 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_007945_040 0.3843896107 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
15 Hb_000982_040 0.3849939477 - - conserved hypothetical protein [Ricinus communis]
16 Hb_089173_010 0.388003642 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
17 Hb_008370_010 0.3916287218 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_001638_220 0.3938752012 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000050_130 0.3961270487 - - Putative Pol polyprotein from transposon element Bs1 [Triticum urartu]
20 Hb_004994_060 0.3986633771 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_003589_070 Hb_003589_070 Hb_002184_100 Hb_002184_100 Hb_003589_070--Hb_002184_100 Hb_000115_300 Hb_000115_300 Hb_003589_070--Hb_000115_300 Hb_004117_300 Hb_004117_300 Hb_003589_070--Hb_004117_300 Hb_181476_010 Hb_181476_010 Hb_003589_070--Hb_181476_010 Hb_000917_140 Hb_000917_140 Hb_003589_070--Hb_000917_140 Hb_038005_010 Hb_038005_010 Hb_003589_070--Hb_038005_010 Hb_089173_010 Hb_089173_010 Hb_002184_100--Hb_089173_010 Hb_008370_010 Hb_008370_010 Hb_002184_100--Hb_008370_010 Hb_006806_010 Hb_006806_010 Hb_002184_100--Hb_006806_010 Hb_054362_010 Hb_054362_010 Hb_002184_100--Hb_054362_010 Hb_127993_010 Hb_127993_010 Hb_002184_100--Hb_127993_010 Hb_000483_210 Hb_000483_210 Hb_000115_300--Hb_000483_210 Hb_000115_300--Hb_002184_100 Hb_002644_030 Hb_002644_030 Hb_000115_300--Hb_002644_030 Hb_004881_100 Hb_004881_100 Hb_000115_300--Hb_004881_100 Hb_178607_010 Hb_178607_010 Hb_000115_300--Hb_178607_010 Hb_004117_300--Hb_000917_140 Hb_004117_300--Hb_181476_010 Hb_004117_300--Hb_038005_010 Hb_002120_020 Hb_002120_020 Hb_004117_300--Hb_002120_020 Hb_184484_010 Hb_184484_010 Hb_004117_300--Hb_184484_010 Hb_027846_010 Hb_027846_010 Hb_004117_300--Hb_027846_010 Hb_181476_010--Hb_000917_140 Hb_181476_010--Hb_038005_010 Hb_181476_010--Hb_002120_020 Hb_181476_010--Hb_184484_010 Hb_181476_010--Hb_027846_010 Hb_000917_140--Hb_038005_010 Hb_000917_140--Hb_002120_020 Hb_000917_140--Hb_184484_010 Hb_000917_140--Hb_027846_010 Hb_038005_010--Hb_002120_020 Hb_038005_010--Hb_184484_010 Hb_038005_010--Hb_027846_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0757746 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0672578 0.17522 0

CAGE analysis