Hb_038005_010

Information

Type -
Description -
Location Contig38005: 1-366
Sequence    

Annotation

kegg
ID pxb:103937251
description thaumatin-like protein
nr
ID XP_012066839.1
description PREDICTED: thaumatin-like protein [Jatropha curcas]
swissprot
ID P81370
description Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2
trembl
ID A0A067LH15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04572 PE=4 SV=1
Gene Ontology
ID GO:0005576
description thaumatin-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038005_010 0.0 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
2 Hb_002120_020 0.0199777438 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
3 Hb_184484_010 0.0284882572 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_027846_010 0.0375768285 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_181476_010 0.0513221797 - - -
6 Hb_004117_300 0.0626398977 - - -
7 Hb_000917_140 0.0713107227 - - -
8 Hb_007945_040 0.1367275799 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
9 Hb_004994_060 0.1673158683 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
10 Hb_003494_170 0.1698556237 - - -
11 Hb_000017_010 0.1702156722 - - -
12 Hb_002028_080 0.1706119144 - - hypothetical protein JCGZ_07571 [Jatropha curcas]
13 Hb_077421_010 0.1708259031 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
14 Hb_011269_050 0.1726970199 - - -
15 Hb_001827_020 0.1734686915 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_001768_030 0.1773719677 - - -
17 Hb_000922_230 0.1791233032 - - -
18 Hb_004724_110 0.1824451285 - - alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]
19 Hb_000270_570 0.1834286544 - - PREDICTED: peroxidase 65-like [Jatropha curcas]
20 Hb_004642_010 0.1859429 - - Integrase core domain, putative [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_038005_010 Hb_038005_010 Hb_002120_020 Hb_002120_020 Hb_038005_010--Hb_002120_020 Hb_184484_010 Hb_184484_010 Hb_038005_010--Hb_184484_010 Hb_027846_010 Hb_027846_010 Hb_038005_010--Hb_027846_010 Hb_181476_010 Hb_181476_010 Hb_038005_010--Hb_181476_010 Hb_004117_300 Hb_004117_300 Hb_038005_010--Hb_004117_300 Hb_000917_140 Hb_000917_140 Hb_038005_010--Hb_000917_140 Hb_002120_020--Hb_184484_010 Hb_002120_020--Hb_027846_010 Hb_002120_020--Hb_181476_010 Hb_002120_020--Hb_004117_300 Hb_002120_020--Hb_000917_140 Hb_184484_010--Hb_027846_010 Hb_184484_010--Hb_181476_010 Hb_184484_010--Hb_004117_300 Hb_184484_010--Hb_000917_140 Hb_027846_010--Hb_181476_010 Hb_007945_040 Hb_007945_040 Hb_027846_010--Hb_007945_040 Hb_027846_010--Hb_004117_300 Hb_181476_010--Hb_004117_300 Hb_181476_010--Hb_000917_140 Hb_004117_300--Hb_000917_140 Hb_000917_140--Hb_027846_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.188796 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.327006 0

CAGE analysis