Hb_004117_300

Information

Type -
Description -
Location Contig4117: 206429-207772
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_300 0.0 - - -
2 Hb_000917_140 0.008688479 - - -
3 Hb_181476_010 0.01133394 - - -
4 Hb_038005_010 0.0626398977 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
5 Hb_002120_020 0.0825747433 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
6 Hb_184484_010 0.0910612082 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_027846_010 0.1001204083 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_007945_040 0.1987222204 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
9 Hb_000982_040 0.1995218161 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004453_200 0.2284466693 - - Boron transporter, putative [Ricinus communis]
11 Hb_004994_060 0.2290623941 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
12 Hb_003494_170 0.2315799468 - - -
13 Hb_000017_010 0.2319368279 - - -
14 Hb_002028_080 0.2323295787 - - hypothetical protein JCGZ_07571 [Jatropha curcas]
15 Hb_077421_010 0.2325416794 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
16 Hb_011269_050 0.2343962134 - - -
17 Hb_001827_020 0.2351610074 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_001768_030 0.2390291499 - - -
19 Hb_000922_230 0.2407645339 - - -
20 Hb_004724_110 0.2440557845 - - alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]

Gene co-expression network

sample Hb_004117_300 Hb_004117_300 Hb_000917_140 Hb_000917_140 Hb_004117_300--Hb_000917_140 Hb_181476_010 Hb_181476_010 Hb_004117_300--Hb_181476_010 Hb_038005_010 Hb_038005_010 Hb_004117_300--Hb_038005_010 Hb_002120_020 Hb_002120_020 Hb_004117_300--Hb_002120_020 Hb_184484_010 Hb_184484_010 Hb_004117_300--Hb_184484_010 Hb_027846_010 Hb_027846_010 Hb_004117_300--Hb_027846_010 Hb_000917_140--Hb_181476_010 Hb_000917_140--Hb_038005_010 Hb_000917_140--Hb_002120_020 Hb_000917_140--Hb_184484_010 Hb_000917_140--Hb_027846_010 Hb_181476_010--Hb_038005_010 Hb_181476_010--Hb_002120_020 Hb_181476_010--Hb_184484_010 Hb_181476_010--Hb_027846_010 Hb_038005_010--Hb_002120_020 Hb_038005_010--Hb_184484_010 Hb_038005_010--Hb_027846_010 Hb_002120_020--Hb_184484_010 Hb_002120_020--Hb_027846_010 Hb_184484_010--Hb_027846_010 Hb_007945_040 Hb_007945_040 Hb_027846_010--Hb_007945_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0356648 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0845636 0

CAGE analysis