Hb_005488_110

Information

Type -
Description -
Location Contig5488: 101056-102618
Sequence    

Annotation

kegg
ID pop:POPTR_0007s05960g
description POPTRDRAFT_53198; hypothetical protein
nr
ID XP_011015670.1
description PREDICTED: cytochrome P450 89A2-like [Populus euphratica]
swissprot
ID Q42602
description Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CYP89A2 PE=2 SV=2
trembl
ID B9HFP3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s05960g PE=3 SV=2
Gene Ontology
ID GO:0005506
description cytochrome p450 89a2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005488_110 0.0 - - PREDICTED: cytochrome P450 89A2-like [Populus euphratica]
2 Hb_000101_160 0.2553506779 - - PREDICTED: uncharacterized protein LOC105133607 isoform X1 [Populus euphratica]
3 Hb_000857_050 0.2564524002 - - PREDICTED: protein YLS9 [Jatropha curcas]
4 Hb_011645_030 0.2568293193 - - -
5 Hb_001369_380 0.2595831564 - - F-box family protein, putative [Theobroma cacao]
6 Hb_002687_040 0.2622354354 - - PREDICTED: alpha-galactosidase 1-like [Jatropha curcas]
7 Hb_090497_010 0.2721103924 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
8 Hb_001450_100 0.2825470298 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
9 Hb_010317_020 0.2938575163 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
10 Hb_000832_200 0.3099872726 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
11 Hb_003683_180 0.3101927186 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001506_010 0.3121630977 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
13 Hb_010620_010 0.3192133308 - - hypothetical protein JCGZ_22570 [Jatropha curcas]
14 Hb_001678_020 0.3209050028 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
15 Hb_000099_210 0.321066322 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
16 Hb_024505_050 0.325940767 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
17 Hb_001102_260 0.330715119 - - hypothetical protein L484_019841 [Morus notabilis]
18 Hb_006483_010 0.3308824382 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_000331_150 0.3353918338 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_001329_260 0.3362740621 - - PREDICTED: uncharacterized protein LOC105642694 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005488_110 Hb_005488_110 Hb_000101_160 Hb_000101_160 Hb_005488_110--Hb_000101_160 Hb_000857_050 Hb_000857_050 Hb_005488_110--Hb_000857_050 Hb_011645_030 Hb_011645_030 Hb_005488_110--Hb_011645_030 Hb_001369_380 Hb_001369_380 Hb_005488_110--Hb_001369_380 Hb_002687_040 Hb_002687_040 Hb_005488_110--Hb_002687_040 Hb_090497_010 Hb_090497_010 Hb_005488_110--Hb_090497_010 Hb_001678_020 Hb_001678_020 Hb_000101_160--Hb_001678_020 Hb_001506_010 Hb_001506_010 Hb_000101_160--Hb_001506_010 Hb_000101_160--Hb_000857_050 Hb_007603_010 Hb_007603_010 Hb_000101_160--Hb_007603_010 Hb_138600_010 Hb_138600_010 Hb_000101_160--Hb_138600_010 Hb_002233_090 Hb_002233_090 Hb_000101_160--Hb_002233_090 Hb_000832_200 Hb_000832_200 Hb_000857_050--Hb_000832_200 Hb_000099_220 Hb_000099_220 Hb_000857_050--Hb_000099_220 Hb_003768_040 Hb_003768_040 Hb_000857_050--Hb_003768_040 Hb_001329_260 Hb_001329_260 Hb_000857_050--Hb_001329_260 Hb_000431_020 Hb_000431_020 Hb_000857_050--Hb_000431_020 Hb_001450_100 Hb_001450_100 Hb_011645_030--Hb_001450_100 Hb_138462_010 Hb_138462_010 Hb_011645_030--Hb_138462_010 Hb_001983_010 Hb_001983_010 Hb_011645_030--Hb_001983_010 Hb_000683_090 Hb_000683_090 Hb_011645_030--Hb_000683_090 Hb_011645_030--Hb_002687_040 Hb_001369_380--Hb_090497_010 Hb_011639_060 Hb_011639_060 Hb_001369_380--Hb_011639_060 Hb_000099_210 Hb_000099_210 Hb_001369_380--Hb_000099_210 Hb_001369_380--Hb_001450_100 Hb_008778_010 Hb_008778_010 Hb_001369_380--Hb_008778_010 Hb_003683_180 Hb_003683_180 Hb_002687_040--Hb_003683_180 Hb_001247_170 Hb_001247_170 Hb_002687_040--Hb_001247_170 Hb_095831_010 Hb_095831_010 Hb_002687_040--Hb_095831_010 Hb_015026_060 Hb_015026_060 Hb_002687_040--Hb_015026_060 Hb_005147_060 Hb_005147_060 Hb_002687_040--Hb_005147_060 Hb_025814_010 Hb_025814_010 Hb_002687_040--Hb_025814_010 Hb_038011_010 Hb_038011_010 Hb_090497_010--Hb_038011_010 Hb_004899_060 Hb_004899_060 Hb_090497_010--Hb_004899_060 Hb_003881_050 Hb_003881_050 Hb_090497_010--Hb_003881_050 Hb_090497_010--Hb_000101_160 Hb_090497_010--Hb_000099_210 Hb_012725_100 Hb_012725_100 Hb_090497_010--Hb_012725_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0392435 0 0.00973014 0.11943 0.24045 0.140704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.132298 0.0560975 0

CAGE analysis