Hb_001369_380

Information

Type -
Description -
Location Contig1369: 338129-339047
Sequence    

Annotation

kegg
ID tcc:TCM_014925
description F-box family protein, putative
nr
ID XP_007038386.1
description F-box family protein, putative [Theobroma cacao]
swissprot
ID Q9FXC7
description Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=3 SV=1
trembl
ID A0A061G0Z9
description F-box family protein, putative OS=Theobroma cacao GN=TCM_014925 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_380 0.0 - - F-box family protein, putative [Theobroma cacao]
2 Hb_090497_010 0.2459353236 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
3 Hb_011639_060 0.2582044762 - - Oligopeptide transporter, putative [Ricinus communis]
4 Hb_005488_110 0.2595831564 - - PREDICTED: cytochrome P450 89A2-like [Populus euphratica]
5 Hb_000099_210 0.2675100788 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
6 Hb_001450_100 0.2807748159 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
7 Hb_008778_010 0.3039500786 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000857_050 0.3053684403 - - PREDICTED: protein YLS9 [Jatropha curcas]
9 Hb_013399_080 0.3069487727 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
10 Hb_001097_060 0.3084661663 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 8 [Jatropha curcas]
11 Hb_000522_140 0.3100678693 - - protein transporter, putative [Ricinus communis]
12 Hb_002139_010 0.3114159182 - - -
13 Hb_000397_100 0.3136898665 - - hypothetical protein 31 [Hevea brasiliensis]
14 Hb_011645_030 0.3143526433 - - -
15 Hb_006495_080 0.317593514 - - hypothetical protein PRUPE_ppb025438mg, partial [Prunus persica]
16 Hb_100964_010 0.3184692608 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_002687_040 0.3202904907 - - PREDICTED: alpha-galactosidase 1-like [Jatropha curcas]
18 Hb_000397_120 0.3203417121 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
19 Hb_004055_110 0.3222434046 - - PREDICTED: uncharacterized protein LOC105631442 isoform X1 [Jatropha curcas]
20 Hb_004228_090 0.3225761521 - - -

Gene co-expression network

sample Hb_001369_380 Hb_001369_380 Hb_090497_010 Hb_090497_010 Hb_001369_380--Hb_090497_010 Hb_011639_060 Hb_011639_060 Hb_001369_380--Hb_011639_060 Hb_005488_110 Hb_005488_110 Hb_001369_380--Hb_005488_110 Hb_000099_210 Hb_000099_210 Hb_001369_380--Hb_000099_210 Hb_001450_100 Hb_001450_100 Hb_001369_380--Hb_001450_100 Hb_008778_010 Hb_008778_010 Hb_001369_380--Hb_008778_010 Hb_038011_010 Hb_038011_010 Hb_090497_010--Hb_038011_010 Hb_004899_060 Hb_004899_060 Hb_090497_010--Hb_004899_060 Hb_003881_050 Hb_003881_050 Hb_090497_010--Hb_003881_050 Hb_000101_160 Hb_000101_160 Hb_090497_010--Hb_000101_160 Hb_090497_010--Hb_000099_210 Hb_012725_100 Hb_012725_100 Hb_090497_010--Hb_012725_100 Hb_002139_010 Hb_002139_010 Hb_011639_060--Hb_002139_010 Hb_000160_030 Hb_000160_030 Hb_011639_060--Hb_000160_030 Hb_095471_010 Hb_095471_010 Hb_011639_060--Hb_095471_010 Hb_000943_030 Hb_000943_030 Hb_011639_060--Hb_000943_030 Hb_002450_110 Hb_002450_110 Hb_011639_060--Hb_002450_110 Hb_005488_110--Hb_000101_160 Hb_000857_050 Hb_000857_050 Hb_005488_110--Hb_000857_050 Hb_011645_030 Hb_011645_030 Hb_005488_110--Hb_011645_030 Hb_002687_040 Hb_002687_040 Hb_005488_110--Hb_002687_040 Hb_005488_110--Hb_090497_010 Hb_007603_010 Hb_007603_010 Hb_000099_210--Hb_007603_010 Hb_008406_140 Hb_008406_140 Hb_000099_210--Hb_008406_140 Hb_005976_050 Hb_005976_050 Hb_000099_210--Hb_005976_050 Hb_000031_150 Hb_000031_150 Hb_000099_210--Hb_000031_150 Hb_002102_030 Hb_002102_030 Hb_000099_210--Hb_002102_030 Hb_007810_100 Hb_007810_100 Hb_000099_210--Hb_007810_100 Hb_000215_260 Hb_000215_260 Hb_001450_100--Hb_000215_260 Hb_001983_010 Hb_001983_010 Hb_001450_100--Hb_001983_010 Hb_077211_010 Hb_077211_010 Hb_001450_100--Hb_077211_010 Hb_001450_100--Hb_012725_100 Hb_001450_100--Hb_000099_210 Hb_088428_010 Hb_088428_010 Hb_001450_100--Hb_088428_010 Hb_000334_180 Hb_000334_180 Hb_008778_010--Hb_000334_180 Hb_008778_010--Hb_004899_060 Hb_002035_080 Hb_002035_080 Hb_008778_010--Hb_002035_080 Hb_008778_010--Hb_005976_050 Hb_089206_010 Hb_089206_010 Hb_008778_010--Hb_089206_010 Hb_000566_030 Hb_000566_030 Hb_008778_010--Hb_000566_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0947812 0 0.0238325 0.114536 0.0889247 0.0559436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.102975 0.0232151 0

CAGE analysis