Hb_000803_140

Information

Type -
Description -
Location Contig803: 205958-207100
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26210g
description POPTRDRAFT_751998; 3-glucanase family protein
nr
ID XP_011045404.1
description PREDICTED: glucan endo-1,3-beta-glucosidase-like [Populus euphratica]
swissprot
ID A7PQW3
description Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera GN=VIT_06s0061g00120 PE=1 SV=2
trembl
ID A9PG23
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0016798
description beta- -glucanase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_140 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase-like [Populus euphratica]
2 Hb_000982_140 0.288722588 - - histidine kinase 1 plant, putative [Ricinus communis]
3 Hb_003494_010 0.3144521204 - - hypothetical protein JCGZ_19838 [Jatropha curcas]
4 Hb_034589_010 0.3612990914 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
5 Hb_002447_020 0.3620077847 - - conserved hypothetical protein [Ricinus communis]
6 Hb_104812_020 0.3829764955 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
7 Hb_000107_470 0.384832896 - - cellulose synthase, putative [Ricinus communis]
8 Hb_003740_010 0.3922380135 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000230_310 0.3977110104 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_001195_190 0.4060924337 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004445_010 0.4073019761 - - kinase family protein [Populus trichocarpa]
12 Hb_003492_030 0.408984599 - - -
13 Hb_003866_010 0.4098138271 - - Polyprotein, putative [Solanum demissum]
14 Hb_000445_340 0.4104992301 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000053_090 0.4108480892 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Populus euphratica]
16 Hb_072639_010 0.4108644136 - - JHL22C18.10 [Jatropha curcas]
17 Hb_008014_080 0.4109697022 - - PREDICTED: uncharacterized protein LOC103848614 [Brassica rapa]
18 Hb_000212_340 0.4110769847 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000163_120 0.4111053912 - - -
20 Hb_000200_260 0.4114773008 - - PREDICTED: uncharacterized protein LOC104232531 isoform X2 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000803_140 Hb_000803_140 Hb_000982_140 Hb_000982_140 Hb_000803_140--Hb_000982_140 Hb_003494_010 Hb_003494_010 Hb_000803_140--Hb_003494_010 Hb_034589_010 Hb_034589_010 Hb_000803_140--Hb_034589_010 Hb_002447_020 Hb_002447_020 Hb_000803_140--Hb_002447_020 Hb_104812_020 Hb_104812_020 Hb_000803_140--Hb_104812_020 Hb_000107_470 Hb_000107_470 Hb_000803_140--Hb_000107_470 Hb_000197_300 Hb_000197_300 Hb_000982_140--Hb_000197_300 Hb_171065_010 Hb_171065_010 Hb_000982_140--Hb_171065_010 Hb_000590_030 Hb_000590_030 Hb_000982_140--Hb_000590_030 Hb_134015_010 Hb_134015_010 Hb_000982_140--Hb_134015_010 Hb_000060_120 Hb_000060_120 Hb_000982_140--Hb_000060_120 Hb_004342_020 Hb_004342_020 Hb_003494_010--Hb_004342_020 Hb_012586_050 Hb_012586_050 Hb_003494_010--Hb_012586_050 Hb_002960_110 Hb_002960_110 Hb_003494_010--Hb_002960_110 Hb_019715_010 Hb_019715_010 Hb_003494_010--Hb_019715_010 Hb_003494_010--Hb_002447_020 Hb_027472_130 Hb_027472_130 Hb_003494_010--Hb_027472_130 Hb_000230_310 Hb_000230_310 Hb_034589_010--Hb_000230_310 Hb_002740_070 Hb_002740_070 Hb_034589_010--Hb_002740_070 Hb_002217_410 Hb_002217_410 Hb_034589_010--Hb_002217_410 Hb_000104_070 Hb_000104_070 Hb_034589_010--Hb_000104_070 Hb_071116_010 Hb_071116_010 Hb_034589_010--Hb_071116_010 Hb_006973_060 Hb_006973_060 Hb_034589_010--Hb_006973_060 Hb_114638_010 Hb_114638_010 Hb_002447_020--Hb_114638_010 Hb_001097_060 Hb_001097_060 Hb_002447_020--Hb_001097_060 Hb_154114_030 Hb_154114_030 Hb_002447_020--Hb_154114_030 Hb_003449_060 Hb_003449_060 Hb_002447_020--Hb_003449_060 Hb_003740_010 Hb_003740_010 Hb_002447_020--Hb_003740_010 Hb_071379_010 Hb_071379_010 Hb_104812_020--Hb_071379_010 Hb_000842_060 Hb_000842_060 Hb_104812_020--Hb_000842_060 Hb_059301_010 Hb_059301_010 Hb_104812_020--Hb_059301_010 Hb_104812_020--Hb_004342_020 Hb_104812_020--Hb_003494_010 Hb_002259_200 Hb_002259_200 Hb_104812_020--Hb_002259_200 Hb_000181_410 Hb_000181_410 Hb_000107_470--Hb_000181_410 Hb_000544_160 Hb_000544_160 Hb_000107_470--Hb_000544_160 Hb_004994_130 Hb_004994_130 Hb_000107_470--Hb_004994_130 Hb_004453_100 Hb_004453_100 Hb_000107_470--Hb_004453_100 Hb_006921_040 Hb_006921_040 Hb_000107_470--Hb_006921_040 Hb_007603_020 Hb_007603_020 Hb_000107_470--Hb_007603_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0251185 0 0.137479 0.0407403 0.215277 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0828312 0 0

CAGE analysis