Hb_000230_310

Information

Type -
Description -
Location Contig230: 302991-304043
Sequence    

Annotation

kegg
ID rcu:RCOM_0678710
description transferase, transferring glycosyl groups, putative
nr
ID XP_002516817.1
description transferase, transferring glycosyl groups, putative [Ricinus communis]
swissprot
ID Q9M8J2
description Probable galacturonosyltransferase-like 4 OS=Arabidopsis thaliana GN=GATL4 PE=2 SV=1
trembl
ID B9RSU8
description Hexosyltransferase OS=Ricinus communis GN=RCOM_0678710 PE=3 SV=1
Gene Ontology
ID GO:0016757
description probable galacturonosyltransferase-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_310 0.0 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
2 Hb_034589_010 0.0993587511 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
3 Hb_002740_070 0.1525182466 - - nitrate transporter, putative [Ricinus communis]
4 Hb_071116_010 0.2317168865 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
5 Hb_002217_410 0.2624330803 - - hypothetical protein L484_027883 [Morus notabilis]
6 Hb_000553_070 0.2703162257 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X2 [Jatropha curcas]
7 Hb_000104_070 0.2740300145 - - PREDICTED: citrate-binding protein-like [Jatropha curcas]
8 Hb_006973_060 0.295814458 - - Uncharacterized protein TCM_038475 [Theobroma cacao]
9 Hb_005181_200 0.3004656819 transcription factor TF Family: GRAS PREDICTED: DELLA protein RGL1-like [Jatropha curcas]
10 Hb_001862_080 0.3007569559 - - hypothetical protein RCOM_1154950 [Ricinus communis]
11 Hb_168241_010 0.336960922 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
12 Hb_184109_010 0.3437851231 - - PREDICTED: transcription factor WER-like [Jatropha curcas]
13 Hb_000302_070 0.3471074796 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
14 Hb_001246_040 0.3490258005 - - hypothetical protein JCGZ_14673 [Jatropha curcas]
15 Hb_133605_010 0.350034194 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
16 Hb_000866_350 0.3509525059 - - -
17 Hb_002447_020 0.3536845114 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000556_030 0.3649703687 - - PREDICTED: probable carboxylesterase 9 [Jatropha curcas]
19 Hb_045985_010 0.36507234 - - hypothetical protein JCGZ_00291 [Jatropha curcas]
20 Hb_005016_180 0.366143035 - - phosphoglycerate kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000230_310 Hb_000230_310 Hb_034589_010 Hb_034589_010 Hb_000230_310--Hb_034589_010 Hb_002740_070 Hb_002740_070 Hb_000230_310--Hb_002740_070 Hb_071116_010 Hb_071116_010 Hb_000230_310--Hb_071116_010 Hb_002217_410 Hb_002217_410 Hb_000230_310--Hb_002217_410 Hb_000553_070 Hb_000553_070 Hb_000230_310--Hb_000553_070 Hb_000104_070 Hb_000104_070 Hb_000230_310--Hb_000104_070 Hb_034589_010--Hb_002740_070 Hb_034589_010--Hb_002217_410 Hb_034589_010--Hb_000104_070 Hb_034589_010--Hb_071116_010 Hb_006973_060 Hb_006973_060 Hb_034589_010--Hb_006973_060 Hb_002740_070--Hb_071116_010 Hb_002740_070--Hb_000553_070 Hb_001862_080 Hb_001862_080 Hb_002740_070--Hb_001862_080 Hb_002228_130 Hb_002228_130 Hb_002740_070--Hb_002228_130 Hb_168241_010 Hb_168241_010 Hb_071116_010--Hb_168241_010 Hb_001628_060 Hb_001628_060 Hb_071116_010--Hb_001628_060 Hb_000556_030 Hb_000556_030 Hb_071116_010--Hb_000556_030 Hb_184109_010 Hb_184109_010 Hb_071116_010--Hb_184109_010 Hb_007017_050 Hb_007017_050 Hb_071116_010--Hb_007017_050 Hb_002217_410--Hb_000104_070 Hb_005016_180 Hb_005016_180 Hb_002217_410--Hb_005016_180 Hb_002217_410--Hb_001862_080 Hb_135569_010 Hb_135569_010 Hb_002217_410--Hb_135569_010 Hb_045985_010 Hb_045985_010 Hb_002217_410--Hb_045985_010 Hb_176082_010 Hb_176082_010 Hb_000553_070--Hb_176082_010 Hb_102748_010 Hb_102748_010 Hb_000553_070--Hb_102748_010 Hb_148777_020 Hb_148777_020 Hb_000553_070--Hb_148777_020 Hb_003517_030 Hb_003517_030 Hb_000553_070--Hb_003517_030 Hb_000046_530 Hb_000046_530 Hb_000553_070--Hb_000046_530 Hb_000104_070--Hb_005016_180 Hb_000104_070--Hb_001862_080 Hb_004994_360 Hb_004994_360 Hb_000104_070--Hb_004994_360 Hb_000104_070--Hb_045985_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0164286 0.0162056 0.0208362 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis