Hb_001628_060

Information

Type -
Description -
Location Contig1628: 58810-63720
Sequence    

Annotation

kegg
ID egr:104419643
description beta-galactosidase 13-like
nr
ID XP_012081767.1
description PREDICTED: beta-galactosidase 13-like isoform X2 [Jatropha curcas]
swissprot
ID Q6ZJJ0
description Beta-galactosidase 11 OS=Oryza sativa subsp. japonica GN=Os08g0549200 PE=2 SV=1
trembl
ID A0A067K3L7
description Beta-galactosidase OS=Jatropha curcas GN=JCGZ_18810 PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta-galactosidase 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14770: 63304-63880
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001628_060 0.0 - - PREDICTED: beta-galactosidase 13-like isoform X2 [Jatropha curcas]
2 Hb_002228_130 0.0842565939 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001488_120 0.1463655891 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
4 Hb_000032_110 0.1726378421 - - nadhp hc toxin reductase, putative [Ricinus communis]
5 Hb_002918_100 0.1726378458 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
6 Hb_023930_010 0.1726480076 - - hypothetical protein RCOM_0641040 [Ricinus communis]
7 Hb_184500_020 0.1726612888 - - -
8 Hb_053709_020 0.1726629711 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
9 Hb_001689_060 0.1726841045 - - PREDICTED: uncharacterized protein LOC103846154 [Brassica rapa]
10 Hb_000039_130 0.1727066926 - - -
11 Hb_000733_140 0.1727539757 - - PREDICTED: ras-related protein Rab2BV-like [Jatropha curcas]
12 Hb_000494_140 0.1727781299 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
13 Hb_000125_050 0.1728467751 - - -
14 Hb_001343_070 0.1729153764 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like [Jatropha curcas]
15 Hb_002909_030 0.1729256201 transcription factor TF Family: C2H2 hypothetical protein RCOM_1270600 [Ricinus communis]
16 Hb_000295_150 0.1731227672 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
17 Hb_007040_020 0.1731836048 - - -
18 Hb_003914_040 0.1731841954 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
19 Hb_001545_090 0.1732505146 - - PREDICTED: uncharacterized protein LOC103874823 [Brassica rapa]
20 Hb_000235_020 0.1736215914 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001628_060 Hb_001628_060 Hb_002228_130 Hb_002228_130 Hb_001628_060--Hb_002228_130 Hb_001488_120 Hb_001488_120 Hb_001628_060--Hb_001488_120 Hb_000032_110 Hb_000032_110 Hb_001628_060--Hb_000032_110 Hb_002918_100 Hb_002918_100 Hb_001628_060--Hb_002918_100 Hb_023930_010 Hb_023930_010 Hb_001628_060--Hb_023930_010 Hb_184500_020 Hb_184500_020 Hb_001628_060--Hb_184500_020 Hb_152640_010 Hb_152640_010 Hb_002228_130--Hb_152640_010 Hb_015175_060 Hb_015175_060 Hb_002228_130--Hb_015175_060 Hb_000330_010 Hb_000330_010 Hb_002228_130--Hb_000330_010 Hb_086639_110 Hb_086639_110 Hb_002228_130--Hb_086639_110 Hb_000107_690 Hb_000107_690 Hb_002228_130--Hb_000107_690 Hb_000009_100 Hb_000009_100 Hb_001488_120--Hb_000009_100 Hb_132880_020 Hb_132880_020 Hb_001488_120--Hb_132880_020 Hb_001152_040 Hb_001152_040 Hb_001488_120--Hb_001152_040 Hb_013394_110 Hb_013394_110 Hb_001488_120--Hb_013394_110 Hb_001976_070 Hb_001976_070 Hb_001488_120--Hb_001976_070 Hb_157881_010 Hb_157881_010 Hb_001488_120--Hb_157881_010 Hb_000032_110--Hb_002918_100 Hb_000032_110--Hb_023930_010 Hb_000032_110--Hb_184500_020 Hb_053709_020 Hb_053709_020 Hb_000032_110--Hb_053709_020 Hb_001689_060 Hb_001689_060 Hb_000032_110--Hb_001689_060 Hb_000039_130 Hb_000039_130 Hb_000032_110--Hb_000039_130 Hb_002918_100--Hb_023930_010 Hb_002918_100--Hb_184500_020 Hb_002918_100--Hb_053709_020 Hb_002918_100--Hb_001689_060 Hb_002918_100--Hb_000039_130 Hb_023930_010--Hb_184500_020 Hb_023930_010--Hb_053709_020 Hb_023930_010--Hb_000039_130 Hb_000494_140 Hb_000494_140 Hb_023930_010--Hb_000494_140 Hb_184500_020--Hb_053709_020 Hb_184500_020--Hb_000039_130 Hb_184500_020--Hb_000494_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0349618 0.0899038 0.00773638 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis