Hb_152640_010

Information

Type -
Description -
Location Contig152640: 71-466
Sequence    

Annotation

kegg
ID pop:POPTR_0006s01550g
description POPTRDRAFT_560178; hypothetical protein
nr
ID XP_011008978.1
description PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
swissprot
ID Q38834
description Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2
trembl
ID B9HCU2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01550g PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance rpp13-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152640_010 0.0 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
2 Hb_002228_130 0.1240028322 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001628_060 0.2063708101 - - PREDICTED: beta-galactosidase 13-like isoform X2 [Jatropha curcas]
4 Hb_015175_060 0.2074550616 - - copper transport protein atox1, putative [Ricinus communis]
5 Hb_001157_070 0.2129684633 - - -
6 Hb_000009_490 0.2133401897 - - hypothetical protein POPTR_0007s12040g [Populus trichocarpa]
7 Hb_089785_010 0.2239369696 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Fragaria vesca subsp. vesca]
8 Hb_012366_010 0.2265666308 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
9 Hb_056718_010 0.2281644548 - - hypothetical protein JCGZ_11777 [Jatropha curcas]
10 Hb_016734_050 0.2295850512 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
11 Hb_000366_070 0.2303470299 - - PREDICTED: protein NRT1/ PTR FAMILY 6.2 [Jatropha curcas]
12 Hb_005081_050 0.2361386015 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Prunus mume]
13 Hb_073680_010 0.2361485868 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
14 Hb_157950_010 0.2361496387 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
15 Hb_003424_040 0.2361653383 - - PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
16 Hb_001922_140 0.2361906281 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000087_110 0.236220094 - - conserved hypothetical protein [Ricinus communis]
18 Hb_093541_010 0.2362779747 - - conserved hypothetical protein [Ricinus communis]
19 Hb_101724_010 0.2363150297 - - glutamate receptor family protein [Populus trichocarpa]
20 Hb_006198_160 0.236567807 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]

Gene co-expression network

sample Hb_152640_010 Hb_152640_010 Hb_002228_130 Hb_002228_130 Hb_152640_010--Hb_002228_130 Hb_001628_060 Hb_001628_060 Hb_152640_010--Hb_001628_060 Hb_015175_060 Hb_015175_060 Hb_152640_010--Hb_015175_060 Hb_001157_070 Hb_001157_070 Hb_152640_010--Hb_001157_070 Hb_000009_490 Hb_000009_490 Hb_152640_010--Hb_000009_490 Hb_089785_010 Hb_089785_010 Hb_152640_010--Hb_089785_010 Hb_002228_130--Hb_001628_060 Hb_002228_130--Hb_015175_060 Hb_000330_010 Hb_000330_010 Hb_002228_130--Hb_000330_010 Hb_086639_110 Hb_086639_110 Hb_002228_130--Hb_086639_110 Hb_000107_690 Hb_000107_690 Hb_002228_130--Hb_000107_690 Hb_001488_120 Hb_001488_120 Hb_001628_060--Hb_001488_120 Hb_000032_110 Hb_000032_110 Hb_001628_060--Hb_000032_110 Hb_002918_100 Hb_002918_100 Hb_001628_060--Hb_002918_100 Hb_023930_010 Hb_023930_010 Hb_001628_060--Hb_023930_010 Hb_184500_020 Hb_184500_020 Hb_001628_060--Hb_184500_020 Hb_016734_050 Hb_016734_050 Hb_015175_060--Hb_016734_050 Hb_056718_010 Hb_056718_010 Hb_015175_060--Hb_056718_010 Hb_013654_030 Hb_013654_030 Hb_015175_060--Hb_013654_030 Hb_012799_080 Hb_012799_080 Hb_015175_060--Hb_012799_080 Hb_001246_080 Hb_001246_080 Hb_015175_060--Hb_001246_080 Hb_010812_080 Hb_010812_080 Hb_015175_060--Hb_010812_080 Hb_001157_070--Hb_000009_490 Hb_001157_070--Hb_089785_010 Hb_012366_010 Hb_012366_010 Hb_001157_070--Hb_012366_010 Hb_000702_050 Hb_000702_050 Hb_001157_070--Hb_000702_050 Hb_003517_030 Hb_003517_030 Hb_001157_070--Hb_003517_030 Hb_000367_040 Hb_000367_040 Hb_001157_070--Hb_000367_040 Hb_000009_490--Hb_089785_010 Hb_000009_490--Hb_012366_010 Hb_000009_490--Hb_000702_050 Hb_000009_490--Hb_000367_040 Hb_000009_490--Hb_003517_030 Hb_089785_010--Hb_012366_010 Hb_089785_010--Hb_003517_030 Hb_148777_020 Hb_148777_020 Hb_089785_010--Hb_148777_020 Hb_176082_010 Hb_176082_010 Hb_089785_010--Hb_176082_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.165601 1.52439 0.202804 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis