Hb_001862_080

Information

Type -
Description -
Location Contig1862: 77869-81144
Sequence    

Annotation

kegg
ID rcu:RCOM_1154950
description hypothetical protein
nr
ID XP_002524957.1
description hypothetical protein RCOM_1154950 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SG38
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1154950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001862_080 0.0 - - hypothetical protein RCOM_1154950 [Ricinus communis]
2 Hb_045985_010 0.1106528623 - - hypothetical protein JCGZ_00291 [Jatropha curcas]
3 Hb_000988_010 0.2047589028 - - hypothetical protein POPTR_0004s17730g [Populus trichocarpa]
4 Hb_002217_410 0.2097718828 - - hypothetical protein L484_027883 [Morus notabilis]
5 Hb_002805_100 0.2143744595 - - Receptor-like protein 12 [Morus notabilis]
6 Hb_006615_110 0.2149017543 transcription factor TF Family: bZIP hypothetical protein JCGZ_11777 [Jatropha curcas]
7 Hb_002675_210 0.2260777298 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
8 Hb_002740_070 0.2371103514 - - nitrate transporter, putative [Ricinus communis]
9 Hb_000104_070 0.2434151908 - - PREDICTED: citrate-binding protein-like [Jatropha curcas]
10 Hb_187739_010 0.2598963692 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
11 Hb_133605_010 0.2676856753 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
12 Hb_071116_010 0.2776627329 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
13 Hb_000553_070 0.2780206761 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X2 [Jatropha curcas]
14 Hb_000406_010 0.2809452577 - - PREDICTED: uncharacterized protein LOC105647846 [Jatropha curcas]
15 Hb_093385_010 0.2811361138 - - PREDICTED: probable mannitol dehydrogenase [Pyrus x bretschneideri]
16 Hb_170516_010 0.2862631638 - - hypothetical protein MTR_001s0023 [Medicago truncatula]
17 Hb_011120_030 0.2954766757 - - PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
18 Hb_000230_310 0.3007569559 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
19 Hb_001269_570 0.3031400503 - - hypothetical protein POPTR_0001s03430g [Populus trichocarpa]
20 Hb_008864_020 0.3045112025 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001862_080 Hb_001862_080 Hb_045985_010 Hb_045985_010 Hb_001862_080--Hb_045985_010 Hb_000988_010 Hb_000988_010 Hb_001862_080--Hb_000988_010 Hb_002217_410 Hb_002217_410 Hb_001862_080--Hb_002217_410 Hb_002805_100 Hb_002805_100 Hb_001862_080--Hb_002805_100 Hb_006615_110 Hb_006615_110 Hb_001862_080--Hb_006615_110 Hb_002675_210 Hb_002675_210 Hb_001862_080--Hb_002675_210 Hb_045985_010--Hb_000988_010 Hb_045985_010--Hb_006615_110 Hb_187739_010 Hb_187739_010 Hb_045985_010--Hb_187739_010 Hb_045985_010--Hb_002805_100 Hb_045985_010--Hb_002675_210 Hb_000988_010--Hb_006615_110 Hb_000988_010--Hb_187739_010 Hb_019733_020 Hb_019733_020 Hb_000988_010--Hb_019733_020 Hb_000988_010--Hb_002675_210 Hb_001518_050 Hb_001518_050 Hb_000988_010--Hb_001518_050 Hb_000104_070 Hb_000104_070 Hb_002217_410--Hb_000104_070 Hb_005016_180 Hb_005016_180 Hb_002217_410--Hb_005016_180 Hb_135569_010 Hb_135569_010 Hb_002217_410--Hb_135569_010 Hb_002217_410--Hb_045985_010 Hb_000230_310 Hb_000230_310 Hb_002217_410--Hb_000230_310 Hb_002805_100--Hb_002675_210 Hb_002805_100--Hb_000988_010 Hb_002805_100--Hb_019733_020 Hb_011120_030 Hb_011120_030 Hb_002805_100--Hb_011120_030 Hb_115445_010 Hb_115445_010 Hb_002805_100--Hb_115445_010 Hb_007125_020 Hb_007125_020 Hb_006615_110--Hb_007125_020 Hb_008196_010 Hb_008196_010 Hb_006615_110--Hb_008196_010 Hb_006615_110--Hb_019733_020 Hb_006615_110--Hb_187739_010 Hb_002675_210--Hb_019733_020 Hb_002675_210--Hb_006615_110 Hb_002675_210--Hb_011120_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0262521 0.0471568 0.118488 0.0586639 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis