Hb_008196_010

Information

Type -
Description -
Location Contig8196: 4857-10461
Sequence    

Annotation

kegg
ID cmo:103485429
description beta-glucosidase 47
nr
ID CDO99725.1
description unnamed protein product [Coffea canephora]
swissprot
ID O80689
description Beta-glucosidase 45 OS=Arabidopsis thaliana GN=BGLU45 PE=1 SV=1
trembl
ID A0A068TTX5
description Coffea canephora DH200=94 genomic scaffold, scaffold_4 OS=Coffea canephora GN=GSCOC_T00029401001 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59541: 5701-5935
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008196_010 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_007125_020 0.0977913742 - - hypothetical protein POPTR_0003s18010g [Populus trichocarpa]
3 Hb_104362_020 0.104428002 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
4 Hb_179367_010 0.1049731323 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_151027_010 0.1088942917 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
6 Hb_002014_120 0.1104100845 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
7 Hb_000174_130 0.1105969458 - - flowering locus T-like protein [Fagus crenata]
8 Hb_004652_040 0.1106550498 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_103000_010 0.1129851122 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
10 Hb_166700_010 0.1167028013 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
11 Hb_009838_030 0.1172425109 - - Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
12 Hb_000352_020 0.1188337317 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
13 Hb_003337_010 0.1196261796 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000579_210 0.1201059363 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
15 Hb_000224_020 0.1260597304 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
16 Hb_174829_030 0.126818927 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001948_100 0.1294504184 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001006_080 0.1306841918 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
19 Hb_045786_010 0.131210559 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_057018_010 0.1325803296 - - hypothetical protein JCGZ_04004 [Jatropha curcas]

Gene co-expression network

sample Hb_008196_010 Hb_008196_010 Hb_007125_020 Hb_007125_020 Hb_008196_010--Hb_007125_020 Hb_104362_020 Hb_104362_020 Hb_008196_010--Hb_104362_020 Hb_179367_010 Hb_179367_010 Hb_008196_010--Hb_179367_010 Hb_151027_010 Hb_151027_010 Hb_008196_010--Hb_151027_010 Hb_002014_120 Hb_002014_120 Hb_008196_010--Hb_002014_120 Hb_000174_130 Hb_000174_130 Hb_008196_010--Hb_000174_130 Hb_009838_030 Hb_009838_030 Hb_007125_020--Hb_009838_030 Hb_001948_100 Hb_001948_100 Hb_007125_020--Hb_001948_100 Hb_007125_020--Hb_002014_120 Hb_000352_020 Hb_000352_020 Hb_007125_020--Hb_000352_020 Hb_004652_040 Hb_004652_040 Hb_007125_020--Hb_004652_040 Hb_003337_010 Hb_003337_010 Hb_007125_020--Hb_003337_010 Hb_104362_020--Hb_179367_010 Hb_104362_020--Hb_151027_010 Hb_104362_020--Hb_000174_130 Hb_104362_020--Hb_002014_120 Hb_104362_020--Hb_004652_040 Hb_103000_010 Hb_103000_010 Hb_104362_020--Hb_103000_010 Hb_179367_010--Hb_002014_120 Hb_179367_010--Hb_004652_040 Hb_179367_010--Hb_103000_010 Hb_179367_010--Hb_000174_130 Hb_179367_010--Hb_151027_010 Hb_151027_010--Hb_000174_130 Hb_166700_010 Hb_166700_010 Hb_151027_010--Hb_166700_010 Hb_174829_030 Hb_174829_030 Hb_151027_010--Hb_174829_030 Hb_151027_010--Hb_004652_040 Hb_002014_120--Hb_004652_040 Hb_002014_120--Hb_103000_010 Hb_002014_120--Hb_003337_010 Hb_002014_120--Hb_009838_030 Hb_002014_120--Hb_001948_100 Hb_000174_130--Hb_166700_010 Hb_000174_130--Hb_103000_010 Hb_000174_130--Hb_004652_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0154877 0.367328 0.341098 1.82047 0.0290142 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0111091 0

CAGE analysis