Hb_000553_070

Information

Type -
Description -
Location Contig553: 90102-106147
Sequence    

Annotation

kegg
ID rcu:RCOM_0955780
description Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15)
nr
ID XP_012066369.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X2 [Jatropha curcas]
swissprot
ID Q9C585
description Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=2 SV=2
trembl
ID B9RQ57
description Ubiquitin carboxyl-terminal hydrolase OS=Ricinus communis GN=RCOM_0955780 PE=3 SV=1
Gene Ontology
ID GO:0008233
description ubiquitin-specific protease 8 isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48328: 90492-90776 , PASA_asmbl_48330: 99808-100059
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000553_070 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X2 [Jatropha curcas]
2 Hb_002740_070 0.167612015 - - nitrate transporter, putative [Ricinus communis]
3 Hb_176082_010 0.2187403976 - - PREDICTED: pirin-like protein [Jatropha curcas]
4 Hb_102748_010 0.2276926472 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
5 Hb_148777_020 0.229081512 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 isoform X1 [Populus euphratica]
6 Hb_003517_030 0.2381770845 - - PREDICTED: putative glycerol-3-phosphate transporter 5 isoform X2 [Eucalyptus grandis]
7 Hb_000046_530 0.2398042325 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF086 [Jatropha curcas]
8 Hb_000640_180 0.2434349337 - - enzyme inhibitor, putative [Ricinus communis]
9 Hb_000563_580 0.2467818378 - - acyltransferase, putative [Ricinus communis]
10 Hb_152640_010 0.2622818984 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
11 Hb_000230_310 0.2703162257 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
12 Hb_001862_080 0.2780206761 - - hypothetical protein RCOM_1154950 [Ricinus communis]
13 Hb_012366_010 0.2882087293 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
14 Hb_089785_010 0.2935316321 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Fragaria vesca subsp. vesca]
15 Hb_143629_160 0.2984324241 - - nitrate transporter, putative [Ricinus communis]
16 Hb_071116_010 0.3050274974 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
17 Hb_002228_130 0.3074200465 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005181_200 0.3384226608 transcription factor TF Family: GRAS PREDICTED: DELLA protein RGL1-like [Jatropha curcas]
19 Hb_002675_210 0.3448819494 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
20 Hb_045985_010 0.3468254778 - - hypothetical protein JCGZ_00291 [Jatropha curcas]

Gene co-expression network

sample Hb_000553_070 Hb_000553_070 Hb_002740_070 Hb_002740_070 Hb_000553_070--Hb_002740_070 Hb_176082_010 Hb_176082_010 Hb_000553_070--Hb_176082_010 Hb_102748_010 Hb_102748_010 Hb_000553_070--Hb_102748_010 Hb_148777_020 Hb_148777_020 Hb_000553_070--Hb_148777_020 Hb_003517_030 Hb_003517_030 Hb_000553_070--Hb_003517_030 Hb_000046_530 Hb_000046_530 Hb_000553_070--Hb_000046_530 Hb_000230_310 Hb_000230_310 Hb_002740_070--Hb_000230_310 Hb_071116_010 Hb_071116_010 Hb_002740_070--Hb_071116_010 Hb_001862_080 Hb_001862_080 Hb_002740_070--Hb_001862_080 Hb_034589_010 Hb_034589_010 Hb_002740_070--Hb_034589_010 Hb_002228_130 Hb_002228_130 Hb_002740_070--Hb_002228_130 Hb_176082_010--Hb_148777_020 Hb_176082_010--Hb_003517_030 Hb_176082_010--Hb_102748_010 Hb_012366_010 Hb_012366_010 Hb_176082_010--Hb_012366_010 Hb_176082_010--Hb_000046_530 Hb_089785_010 Hb_089785_010 Hb_176082_010--Hb_089785_010 Hb_102748_010--Hb_000046_530 Hb_000640_180 Hb_000640_180 Hb_102748_010--Hb_000640_180 Hb_000563_580 Hb_000563_580 Hb_102748_010--Hb_000563_580 Hb_143629_160 Hb_143629_160 Hb_102748_010--Hb_143629_160 Hb_102748_010--Hb_148777_020 Hb_148777_020--Hb_003517_030 Hb_148777_020--Hb_012366_010 Hb_148777_020--Hb_089785_010 Hb_148777_020--Hb_000046_530 Hb_003517_030--Hb_012366_010 Hb_003517_030--Hb_089785_010 Hb_001157_070 Hb_001157_070 Hb_003517_030--Hb_001157_070 Hb_003517_030--Hb_102748_010 Hb_000046_530--Hb_000640_180 Hb_000046_530--Hb_000563_580 Hb_000046_530--Hb_143629_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00981652 0.0610931 0.0396631 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis