Hb_000563_580

Information

Type -
Description -
Location Contig563: 431729-434019
Sequence    

Annotation

kegg
ID rcu:RCOM_0681460
description acyltransferase, putative
nr
ID XP_002516940.1
description acyltransferase, putative [Ricinus communis]
swissprot
ID Q9FH27
description Probable 3-ketoacyl-CoA synthase 20 OS=Arabidopsis thaliana GN=KCS20 PE=2 SV=1
trembl
ID B9RT71
description 3-ketoacyl-CoA synthase OS=Ricinus communis GN=RCOM_0681460 PE=3 SV=1
Gene Ontology
ID GO:0003824
description probable 3-ketoacyl- synthase 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_580 0.0 - - acyltransferase, putative [Ricinus communis]
2 Hb_000640_180 0.0070884437 - - enzyme inhibitor, putative [Ricinus communis]
3 Hb_000046_530 0.0151633787 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF086 [Jatropha curcas]
4 Hb_102748_010 0.0465854149 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
5 Hb_143629_160 0.0880568838 - - nitrate transporter, putative [Ricinus communis]
6 Hb_176082_010 0.1706301492 - - PREDICTED: pirin-like protein [Jatropha curcas]
7 Hb_148777_020 0.207898731 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 isoform X1 [Populus euphratica]
8 Hb_003517_030 0.2309828702 - - PREDICTED: putative glycerol-3-phosphate transporter 5 isoform X2 [Eucalyptus grandis]
9 Hb_000553_070 0.2467818378 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X2 [Jatropha curcas]
10 Hb_066415_010 0.3188428452 - - -
11 Hb_012366_010 0.3195183279 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
12 Hb_089785_010 0.3273078834 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Fragaria vesca subsp. vesca]
13 Hb_005654_020 0.3301768651 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_009815_010 0.3523403938 - - -
15 Hb_000679_160 0.3701642589 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
16 Hb_002740_070 0.3781477733 - - nitrate transporter, putative [Ricinus communis]
17 Hb_001823_080 0.3862449146 - - hypothetical protein VITISV_012142 [Vitis vinifera]
18 Hb_145708_010 0.4022750703 - - PREDICTED: transcription factor ILR3-like isoform X1 [Jatropha curcas]
19 Hb_004266_010 0.4031649873 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
20 Hb_001157_070 0.4062401422 - - -

Gene co-expression network

sample Hb_000563_580 Hb_000563_580 Hb_000640_180 Hb_000640_180 Hb_000563_580--Hb_000640_180 Hb_000046_530 Hb_000046_530 Hb_000563_580--Hb_000046_530 Hb_102748_010 Hb_102748_010 Hb_000563_580--Hb_102748_010 Hb_143629_160 Hb_143629_160 Hb_000563_580--Hb_143629_160 Hb_176082_010 Hb_176082_010 Hb_000563_580--Hb_176082_010 Hb_148777_020 Hb_148777_020 Hb_000563_580--Hb_148777_020 Hb_000640_180--Hb_000046_530 Hb_000640_180--Hb_102748_010 Hb_000640_180--Hb_143629_160 Hb_000640_180--Hb_176082_010 Hb_000640_180--Hb_148777_020 Hb_000046_530--Hb_102748_010 Hb_000046_530--Hb_143629_160 Hb_000046_530--Hb_176082_010 Hb_000046_530--Hb_148777_020 Hb_102748_010--Hb_176082_010 Hb_102748_010--Hb_143629_160 Hb_102748_010--Hb_148777_020 Hb_143629_160--Hb_176082_010 Hb_066415_010 Hb_066415_010 Hb_143629_160--Hb_066415_010 Hb_176082_010--Hb_148777_020 Hb_003517_030 Hb_003517_030 Hb_176082_010--Hb_003517_030 Hb_012366_010 Hb_012366_010 Hb_176082_010--Hb_012366_010 Hb_089785_010 Hb_089785_010 Hb_176082_010--Hb_089785_010 Hb_148777_020--Hb_003517_030 Hb_148777_020--Hb_012366_010 Hb_148777_020--Hb_089785_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0287649 0.0338868 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis