Hb_003494_010

Information

Type -
Description -
Location Contig3494: 5629-12070
Sequence    

Annotation

kegg
ID tcc:TCM_018503
description Ankyrin repeat family protein, putative isoform 1
nr
ID KDP27139.1
description hypothetical protein JCGZ_19838 [Jatropha curcas]
swissprot
ID Q54HW1
description 26S proteasome non-ATPase regulatory subunit 10 OS=Dictyostelium discoideum GN=psmD10 PE=2 SV=1
trembl
ID A0A067K5R3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19838 PE=4 SV=1
Gene Ontology
ID GO:0000166
description ankyrin repeat family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36333: 5086-12578 , PASA_asmbl_36334: 6786-10265 , PASA_asmbl_36335: 6786-10265
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003494_010 0.0 - - hypothetical protein JCGZ_19838 [Jatropha curcas]
2 Hb_004342_020 0.2323450265 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
3 Hb_012586_050 0.2449550436 - - PREDICTED: triosephosphate isomerase, cytosolic [Prunus mume]
4 Hb_002960_110 0.2467777191 - - PREDICTED: synaptotagmin-2 isoform X1 [Jatropha curcas]
5 Hb_019715_010 0.2488994137 - - carbon catabolite repressor protein, putative [Ricinus communis]
6 Hb_002447_020 0.2605766229 - - conserved hypothetical protein [Ricinus communis]
7 Hb_027472_130 0.263604156 - - Cytochrome P450 [Theobroma cacao]
8 Hb_131864_030 0.2652928486 transcription factor TF Family: C2H2 transcription factor, putative [Ricinus communis]
9 Hb_001138_030 0.2691445887 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
10 Hb_002475_120 0.27295142 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
11 Hb_154114_030 0.2761528809 - - amino acid binding protein, putative [Ricinus communis]
12 Hb_002232_190 0.2795462747 - - conserved hypothetical protein [Ricinus communis]
13 Hb_098315_070 0.2812559744 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105636030 isoform X1 [Jatropha curcas]
14 Hb_028486_060 0.2819406287 - - PREDICTED: putative germin-like protein 9-2 [Jatropha curcas]
15 Hb_045481_010 0.2842016466 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
16 Hb_000107_470 0.2860500247 - - cellulose synthase, putative [Ricinus communis]
17 Hb_027380_030 0.29086961 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
18 Hb_002942_090 0.2938784384 - - DNAJ heat shock N-terminal domain-containing protein, putative [Theobroma cacao]
19 Hb_006831_100 0.2940589324 - - snRNA-activating protein complex subunit, putative [Ricinus communis]
20 Hb_027402_090 0.2952674239 - - endonuclease, putative [Ricinus communis]

Gene co-expression network

sample Hb_003494_010 Hb_003494_010 Hb_004342_020 Hb_004342_020 Hb_003494_010--Hb_004342_020 Hb_012586_050 Hb_012586_050 Hb_003494_010--Hb_012586_050 Hb_002960_110 Hb_002960_110 Hb_003494_010--Hb_002960_110 Hb_019715_010 Hb_019715_010 Hb_003494_010--Hb_019715_010 Hb_002447_020 Hb_002447_020 Hb_003494_010--Hb_002447_020 Hb_027472_130 Hb_027472_130 Hb_003494_010--Hb_027472_130 Hb_004342_020--Hb_019715_010 Hb_001277_280 Hb_001277_280 Hb_004342_020--Hb_001277_280 Hb_001377_030 Hb_001377_030 Hb_004342_020--Hb_001377_030 Hb_002450_040 Hb_002450_040 Hb_004342_020--Hb_002450_040 Hb_011249_030 Hb_011249_030 Hb_004342_020--Hb_011249_030 Hb_026549_020 Hb_026549_020 Hb_004342_020--Hb_026549_020 Hb_002232_190 Hb_002232_190 Hb_012586_050--Hb_002232_190 Hb_000139_220 Hb_000139_220 Hb_012586_050--Hb_000139_220 Hb_000453_040 Hb_000453_040 Hb_012586_050--Hb_000453_040 Hb_004223_110 Hb_004223_110 Hb_012586_050--Hb_004223_110 Hb_012586_050--Hb_019715_010 Hb_000599_170 Hb_000599_170 Hb_012586_050--Hb_000599_170 Hb_000424_070 Hb_000424_070 Hb_002960_110--Hb_000424_070 Hb_074792_010 Hb_074792_010 Hb_002960_110--Hb_074792_010 Hb_000189_390 Hb_000189_390 Hb_002960_110--Hb_000189_390 Hb_003529_180 Hb_003529_180 Hb_002960_110--Hb_003529_180 Hb_000300_710 Hb_000300_710 Hb_002960_110--Hb_000300_710 Hb_000638_260 Hb_000638_260 Hb_002960_110--Hb_000638_260 Hb_019715_010--Hb_011249_030 Hb_019715_010--Hb_001277_280 Hb_005463_130 Hb_005463_130 Hb_019715_010--Hb_005463_130 Hb_000287_050 Hb_000287_050 Hb_019715_010--Hb_000287_050 Hb_000012_270 Hb_000012_270 Hb_019715_010--Hb_000012_270 Hb_114638_010 Hb_114638_010 Hb_002447_020--Hb_114638_010 Hb_001097_060 Hb_001097_060 Hb_002447_020--Hb_001097_060 Hb_154114_030 Hb_154114_030 Hb_002447_020--Hb_154114_030 Hb_003449_060 Hb_003449_060 Hb_002447_020--Hb_003449_060 Hb_003740_010 Hb_003740_010 Hb_002447_020--Hb_003740_010 Hb_001269_510 Hb_001269_510 Hb_027472_130--Hb_001269_510 Hb_027472_130--Hb_002960_110 Hb_000058_050 Hb_000058_050 Hb_027472_130--Hb_000058_050 Hb_131864_030 Hb_131864_030 Hb_027472_130--Hb_131864_030 Hb_000613_040 Hb_000613_040 Hb_027472_130--Hb_000613_040 Hb_027472_130--Hb_000189_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.674252 0.375952 4.13374 0.76283 3.47657 0.679991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.227993 0.0527695 0.848938 0.213395 0.135283

CAGE analysis