Hb_004228_090

Information

Type -
Description -
Location Contig4228: 80896-81413
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004228_090 0.0 - - -
2 Hb_002311_060 0.1049144145 - - PREDICTED: protein trichome birefringence-like 4 [Jatropha curcas]
3 Hb_000816_270 0.2648984411 - - -
4 Hb_134015_010 0.2813264849 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
5 Hb_008778_010 0.2963221785 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_006911_050 0.3000561466 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
7 Hb_001554_010 0.3078902818 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
8 Hb_004899_060 0.3164930482 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
9 Hb_021576_020 0.3196148421 - - PREDICTED: uncharacterized protein LOC104426132 [Eucalyptus grandis]
10 Hb_001369_380 0.3225761521 - - F-box family protein, putative [Theobroma cacao]
11 Hb_008494_050 0.3229176422 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
12 Hb_000256_070 0.3232575871 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
13 Hb_001366_120 0.3238418442 - - unknown [Zea mays]
14 Hb_176825_010 0.3273946611 - - PREDICTED: uncharacterized protein LOC105630857 isoform X2 [Jatropha curcas]
15 Hb_000133_070 0.3299734666 - - -
16 Hb_160715_010 0.3342866188 - - -
17 Hb_000566_030 0.3359821354 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
18 Hb_003925_020 0.336984361 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
19 Hb_000144_140 0.341769251 - - PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]
20 Hb_003680_210 0.3451759848 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]

Gene co-expression network

sample Hb_004228_090 Hb_004228_090 Hb_002311_060 Hb_002311_060 Hb_004228_090--Hb_002311_060 Hb_000816_270 Hb_000816_270 Hb_004228_090--Hb_000816_270 Hb_134015_010 Hb_134015_010 Hb_004228_090--Hb_134015_010 Hb_008778_010 Hb_008778_010 Hb_004228_090--Hb_008778_010 Hb_006911_050 Hb_006911_050 Hb_004228_090--Hb_006911_050 Hb_001554_010 Hb_001554_010 Hb_004228_090--Hb_001554_010 Hb_002311_060--Hb_134015_010 Hb_002311_060--Hb_008778_010 Hb_021576_020 Hb_021576_020 Hb_002311_060--Hb_021576_020 Hb_003680_210 Hb_003680_210 Hb_002311_060--Hb_003680_210 Hb_002311_060--Hb_000816_270 Hb_007125_010 Hb_007125_010 Hb_000816_270--Hb_007125_010 Hb_161929_010 Hb_161929_010 Hb_000816_270--Hb_161929_010 Hb_003760_040 Hb_003760_040 Hb_000816_270--Hb_003760_040 Hb_001277_310 Hb_001277_310 Hb_000816_270--Hb_001277_310 Hb_134015_010--Hb_021576_020 Hb_000080_160 Hb_000080_160 Hb_134015_010--Hb_000080_160 Hb_079751_010 Hb_079751_010 Hb_134015_010--Hb_079751_010 Hb_032717_070 Hb_032717_070 Hb_134015_010--Hb_032717_070 Hb_000334_180 Hb_000334_180 Hb_008778_010--Hb_000334_180 Hb_004899_060 Hb_004899_060 Hb_008778_010--Hb_004899_060 Hb_002035_080 Hb_002035_080 Hb_008778_010--Hb_002035_080 Hb_005976_050 Hb_005976_050 Hb_008778_010--Hb_005976_050 Hb_089206_010 Hb_089206_010 Hb_008778_010--Hb_089206_010 Hb_000566_030 Hb_000566_030 Hb_008778_010--Hb_000566_030 Hb_000256_070 Hb_000256_070 Hb_006911_050--Hb_000256_070 Hb_000032_450 Hb_000032_450 Hb_006911_050--Hb_000032_450 Hb_006911_050--Hb_004899_060 Hb_001711_050 Hb_001711_050 Hb_006911_050--Hb_001711_050 Hb_001008_180 Hb_001008_180 Hb_006911_050--Hb_001008_180 Hb_001006_220 Hb_001006_220 Hb_006911_050--Hb_001006_220 Hb_001554_010--Hb_021576_020 Hb_003464_070 Hb_003464_070 Hb_001554_010--Hb_003464_070 Hb_026549_010 Hb_026549_010 Hb_001554_010--Hb_026549_010 Hb_002998_070 Hb_002998_070 Hb_001554_010--Hb_002998_070 Hb_010889_020 Hb_010889_020 Hb_001554_010--Hb_010889_020 Hb_023344_070 Hb_023344_070 Hb_001554_010--Hb_023344_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0810476 0 0.127095 0.388356 0.08202 0.147435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.485406 0.321725 0

CAGE analysis