Hb_010889_020

Information

Type -
Description -
Location Contig10889: 18267-29756
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02688: 21652-21752 , PASA_asmbl_02689: 19436-19661 , PASA_asmbl_02693: 26841-27610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010889_020 0.0 - - -
2 Hb_000608_220 0.1873748178 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
3 Hb_027402_080 0.2349126565 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
4 Hb_001554_010 0.2366255844 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
5 Hb_144096_010 0.2697655628 - - aldo-keto reductase, putative [Ricinus communis]
6 Hb_002876_160 0.2742930556 - - sucrose transporter 1 [Hevea brasiliensis]
7 Hb_000384_110 0.2818943324 - - conserved hypothetical protein [Ricinus communis]
8 Hb_026549_010 0.2858571117 - - -
9 Hb_000012_210 0.291961391 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
10 Hb_000051_050 0.2989650679 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
11 Hb_001369_470 0.2993155467 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
12 Hb_129204_020 0.3060254486 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
13 Hb_003906_180 0.3064523563 - - unknown [Zea mays]
14 Hb_000856_050 0.3071874954 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
15 Hb_005146_080 0.3094860888 - - PREDICTED: uncharacterized protein LOC105636704 isoform X2 [Jatropha curcas]
16 Hb_000784_080 0.3096896451 - - protein disulfide isomerase, putative [Ricinus communis]
17 Hb_000062_010 0.3107265431 - - Alpha-L-fucosidase 2 precursor, putative [Ricinus communis]
18 Hb_018118_030 0.3110815651 - - PREDICTED: putative multidrug resistance protein, partial [Musa acuminata subsp. malaccensis]
19 Hb_142911_010 0.3119041402 - - PREDICTED: probable receptor-like protein kinase At1g49730 [Jatropha curcas]
20 Hb_000622_340 0.3121238772 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [Jatropha curcas]

Gene co-expression network

sample Hb_010889_020 Hb_010889_020 Hb_000608_220 Hb_000608_220 Hb_010889_020--Hb_000608_220 Hb_027402_080 Hb_027402_080 Hb_010889_020--Hb_027402_080 Hb_001554_010 Hb_001554_010 Hb_010889_020--Hb_001554_010 Hb_144096_010 Hb_144096_010 Hb_010889_020--Hb_144096_010 Hb_002876_160 Hb_002876_160 Hb_010889_020--Hb_002876_160 Hb_000384_110 Hb_000384_110 Hb_010889_020--Hb_000384_110 Hb_000933_100 Hb_000933_100 Hb_000608_220--Hb_000933_100 Hb_000608_220--Hb_027402_080 Hb_001143_240 Hb_001143_240 Hb_000608_220--Hb_001143_240 Hb_000051_050 Hb_000051_050 Hb_000608_220--Hb_000051_050 Hb_004945_020 Hb_004945_020 Hb_000608_220--Hb_004945_020 Hb_027402_080--Hb_001554_010 Hb_000661_060 Hb_000661_060 Hb_027402_080--Hb_000661_060 Hb_002131_040 Hb_002131_040 Hb_027402_080--Hb_002131_040 Hb_027402_080--Hb_000933_100 Hb_021576_020 Hb_021576_020 Hb_001554_010--Hb_021576_020 Hb_003464_070 Hb_003464_070 Hb_001554_010--Hb_003464_070 Hb_026549_010 Hb_026549_010 Hb_001554_010--Hb_026549_010 Hb_002998_070 Hb_002998_070 Hb_001554_010--Hb_002998_070 Hb_023344_070 Hb_023344_070 Hb_001554_010--Hb_023344_070 Hb_039342_010 Hb_039342_010 Hb_144096_010--Hb_039342_010 Hb_018118_030 Hb_018118_030 Hb_144096_010--Hb_018118_030 Hb_005188_030 Hb_005188_030 Hb_144096_010--Hb_005188_030 Hb_030736_070 Hb_030736_070 Hb_144096_010--Hb_030736_070 Hb_144096_010--Hb_000051_050 Hb_000739_080 Hb_000739_080 Hb_144096_010--Hb_000739_080 Hb_002700_080 Hb_002700_080 Hb_002876_160--Hb_002700_080 Hb_002026_060 Hb_002026_060 Hb_002876_160--Hb_002026_060 Hb_002876_160--Hb_005188_030 Hb_023344_060 Hb_023344_060 Hb_002876_160--Hb_023344_060 Hb_002876_160--Hb_000384_110 Hb_000665_020 Hb_000665_020 Hb_002876_160--Hb_000665_020 Hb_003938_160 Hb_003938_160 Hb_000384_110--Hb_003938_160 Hb_000384_110--Hb_005188_030 Hb_000931_020 Hb_000931_020 Hb_000384_110--Hb_000931_020 Hb_000384_110--Hb_018118_030 Hb_000984_310 Hb_000984_310 Hb_000384_110--Hb_000984_310 Hb_000622_340 Hb_000622_340 Hb_000384_110--Hb_000622_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.122266 0.131615 0.149464 0.10895 0.0334064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0507117 0.0920147 0.102512 0

CAGE analysis