Hb_000933_100

Information

Type -
Description -
Location Contig933: 153311-157326
Sequence    

Annotation

kegg
ID rcu:RCOM_1622310
description hypothetical protein
nr
ID XP_002512135.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCY7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1622310 PE=4 SV=1
Gene Ontology
ID GO:0010359
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62896: 153489-154043 , PASA_asmbl_62897: 156437-156561 , PASA_asmbl_62898: 156847-157365
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000933_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004635_130 0.2089578004 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
3 Hb_002316_130 0.2109880291 - - hypothetical protein POPTR_0015s08440g [Populus trichocarpa]
4 Hb_000190_190 0.2136440945 - - PREDICTED: BI1-like protein [Gossypium raimondii]
5 Hb_004137_100 0.2146023267 - - PREDICTED: alcohol dehydrogenase 1 [Jatropha curcas]
6 Hb_006816_170 0.215268013 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
7 Hb_002391_360 0.2153798081 - - hypothetical protein CICLE_v10026208mg [Citrus clementina]
8 Hb_000844_070 0.2212850414 - - hypothetical protein POPTR_0014s03640g [Populus trichocarpa]
9 Hb_058643_010 0.223933522 - - hydrolase, putative [Ricinus communis]
10 Hb_000103_310 0.2244110555 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
11 Hb_000522_170 0.2246024887 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
12 Hb_019641_030 0.2265862122 - - chitin elicitor receptor kinase 1 [Chrysanthemum boreale]
13 Hb_058620_070 0.2286818632 - - unnamed protein product [Chondrus crispus]
14 Hb_015026_110 0.2305224752 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
15 Hb_003206_090 0.2314172489 - - PREDICTED: protein trichome birefringence-like 5 [Jatropha curcas]
16 Hb_000366_200 0.2314378428 - - PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
17 Hb_011942_050 0.2317691571 - - PREDICTED: probable serine incorporator [Jatropha curcas]
18 Hb_003436_020 0.2321919937 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
19 Hb_000212_320 0.232755863 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
20 Hb_103494_010 0.2332525715 - - -

Gene co-expression network

sample Hb_000933_100 Hb_000933_100 Hb_004635_130 Hb_004635_130 Hb_000933_100--Hb_004635_130 Hb_002316_130 Hb_002316_130 Hb_000933_100--Hb_002316_130 Hb_000190_190 Hb_000190_190 Hb_000933_100--Hb_000190_190 Hb_004137_100 Hb_004137_100 Hb_000933_100--Hb_004137_100 Hb_006816_170 Hb_006816_170 Hb_000933_100--Hb_006816_170 Hb_002391_360 Hb_002391_360 Hb_000933_100--Hb_002391_360 Hb_000755_080 Hb_000755_080 Hb_004635_130--Hb_000755_080 Hb_001051_090 Hb_001051_090 Hb_004635_130--Hb_001051_090 Hb_003327_030 Hb_003327_030 Hb_004635_130--Hb_003327_030 Hb_000787_090 Hb_000787_090 Hb_004635_130--Hb_000787_090 Hb_002896_060 Hb_002896_060 Hb_004635_130--Hb_002896_060 Hb_002814_120 Hb_002814_120 Hb_004635_130--Hb_002814_120 Hb_030928_040 Hb_030928_040 Hb_002316_130--Hb_030928_040 Hb_000317_470 Hb_000317_470 Hb_002316_130--Hb_000317_470 Hb_005144_090 Hb_005144_090 Hb_002316_130--Hb_005144_090 Hb_000049_140 Hb_000049_140 Hb_002316_130--Hb_000049_140 Hb_003185_010 Hb_003185_010 Hb_002316_130--Hb_003185_010 Hb_002783_170 Hb_002783_170 Hb_002316_130--Hb_002783_170 Hb_033312_150 Hb_033312_150 Hb_000190_190--Hb_033312_150 Hb_001232_100 Hb_001232_100 Hb_000190_190--Hb_001232_100 Hb_001454_170 Hb_001454_170 Hb_000190_190--Hb_001454_170 Hb_006618_040 Hb_006618_040 Hb_000190_190--Hb_006618_040 Hb_000190_190--Hb_004635_130 Hb_097218_010 Hb_097218_010 Hb_000190_190--Hb_097218_010 Hb_004586_150 Hb_004586_150 Hb_004137_100--Hb_004586_150 Hb_009193_090 Hb_009193_090 Hb_004137_100--Hb_009193_090 Hb_000184_240 Hb_000184_240 Hb_004137_100--Hb_000184_240 Hb_000600_060 Hb_000600_060 Hb_004137_100--Hb_000600_060 Hb_007545_120 Hb_007545_120 Hb_004137_100--Hb_007545_120 Hb_004137_100--Hb_002391_360 Hb_001247_200 Hb_001247_200 Hb_006816_170--Hb_001247_200 Hb_002489_010 Hb_002489_010 Hb_006816_170--Hb_002489_010 Hb_002239_040 Hb_002239_040 Hb_006816_170--Hb_002239_040 Hb_034299_040 Hb_034299_040 Hb_006816_170--Hb_034299_040 Hb_000384_030 Hb_000384_030 Hb_006816_170--Hb_000384_030 Hb_002233_090 Hb_002233_090 Hb_006816_170--Hb_002233_090 Hb_002259_080 Hb_002259_080 Hb_002391_360--Hb_002259_080 Hb_000365_030 Hb_000365_030 Hb_002391_360--Hb_000365_030 Hb_000130_020 Hb_000130_020 Hb_002391_360--Hb_000130_020 Hb_006501_010 Hb_006501_010 Hb_002391_360--Hb_006501_010 Hb_005730_010 Hb_005730_010 Hb_002391_360--Hb_005730_010 Hb_000635_030 Hb_000635_030 Hb_002391_360--Hb_000635_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.186944 0.276305 0.67079 0.987554 2.02749 0.474055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.18433 0.344458 0.68723 1.12538 0.229756

CAGE analysis