Hb_001143_240

Information

Type -
Description -
Location Contig1143: 227782-228256
Sequence    

Annotation

kegg
ID rcu:RCOM_0563200
description 8-oxoguanine DNA glycosylase, putative
nr
ID XP_002520336.1
description 8-oxoguanine DNA glycosylase, putative [Ricinus communis]
swissprot
ID Q9FNY7
description N-glycosylase/DNA lyase OGG1 OS=Arabidopsis thaliana GN=OGG1 PE=1 SV=1
trembl
ID B9S2W7
description 8-oxoguanine DNA glycosylase, putative OS=Ricinus communis GN=RCOM_0563200 PE=4 SV=1
Gene Ontology
ID GO:0003824
description n-glycosylase dna lyase ogg1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_240 0.0 - - 8-oxoguanine DNA glycosylase, putative [Ricinus communis]
2 Hb_144096_010 0.2075755226 - - aldo-keto reductase, putative [Ricinus communis]
3 Hb_007645_120 0.2111631326 - - hypothetical protein POPTR_0006s05370g [Populus trichocarpa]
4 Hb_003025_050 0.2122966355 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
5 Hb_005548_020 0.2253084716 - - hypothetical protein JCGZ_05605 [Jatropha curcas]
6 Hb_031527_070 0.2276100412 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
7 Hb_027634_030 0.228959324 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
8 Hb_002890_100 0.2322975723 - - PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]
9 Hb_002666_080 0.2334142909 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_003388_050 0.2354218391 - - -
11 Hb_000853_120 0.2416275654 - - PREDICTED: ethylene response sensor 1 [Jatropha curcas]
12 Hb_003107_020 0.2427265222 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
13 Hb_003891_070 0.2459264874 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
14 Hb_000181_290 0.2485288234 - - hypothetical protein POPTR_0001s41000g [Populus trichocarpa]
15 Hb_010531_050 0.2505130193 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
16 Hb_001952_130 0.2515219154 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
17 Hb_145880_010 0.2516506645 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
18 Hb_000608_220 0.2522021867 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
19 Hb_003097_080 0.253633327 - - hypothetical protein JCGZ_24481 [Jatropha curcas]
20 Hb_013818_030 0.2537716862 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001143_240 Hb_001143_240 Hb_144096_010 Hb_144096_010 Hb_001143_240--Hb_144096_010 Hb_007645_120 Hb_007645_120 Hb_001143_240--Hb_007645_120 Hb_003025_050 Hb_003025_050 Hb_001143_240--Hb_003025_050 Hb_005548_020 Hb_005548_020 Hb_001143_240--Hb_005548_020 Hb_031527_070 Hb_031527_070 Hb_001143_240--Hb_031527_070 Hb_027634_030 Hb_027634_030 Hb_001143_240--Hb_027634_030 Hb_039342_010 Hb_039342_010 Hb_144096_010--Hb_039342_010 Hb_018118_030 Hb_018118_030 Hb_144096_010--Hb_018118_030 Hb_005188_030 Hb_005188_030 Hb_144096_010--Hb_005188_030 Hb_030736_070 Hb_030736_070 Hb_144096_010--Hb_030736_070 Hb_000051_050 Hb_000051_050 Hb_144096_010--Hb_000051_050 Hb_000739_080 Hb_000739_080 Hb_144096_010--Hb_000739_080 Hb_003125_140 Hb_003125_140 Hb_007645_120--Hb_003125_140 Hb_156144_030 Hb_156144_030 Hb_007645_120--Hb_156144_030 Hb_000120_570 Hb_000120_570 Hb_007645_120--Hb_000120_570 Hb_102129_070 Hb_102129_070 Hb_007645_120--Hb_102129_070 Hb_000453_140 Hb_000453_140 Hb_007645_120--Hb_000453_140 Hb_006831_100 Hb_006831_100 Hb_007645_120--Hb_006831_100 Hb_002666_080 Hb_002666_080 Hb_003025_050--Hb_002666_080 Hb_002890_100 Hb_002890_100 Hb_003025_050--Hb_002890_100 Hb_003780_090 Hb_003780_090 Hb_003025_050--Hb_003780_090 Hb_118840_050 Hb_118840_050 Hb_003025_050--Hb_118840_050 Hb_005333_030 Hb_005333_030 Hb_003025_050--Hb_005333_030 Hb_000215_190 Hb_000215_190 Hb_003025_050--Hb_000215_190 Hb_005548_020--Hb_027634_030 Hb_003050_390 Hb_003050_390 Hb_005548_020--Hb_003050_390 Hb_001840_090 Hb_001840_090 Hb_005548_020--Hb_001840_090 Hb_000011_400 Hb_000011_400 Hb_005548_020--Hb_000011_400 Hb_003090_100 Hb_003090_100 Hb_005548_020--Hb_003090_100 Hb_000270_520 Hb_000270_520 Hb_005548_020--Hb_000270_520 Hb_031527_070--Hb_005333_030 Hb_031527_070--Hb_003025_050 Hb_003096_040 Hb_003096_040 Hb_031527_070--Hb_003096_040 Hb_031527_070--Hb_002890_100 Hb_009028_030 Hb_009028_030 Hb_031527_070--Hb_009028_030 Hb_004195_060 Hb_004195_060 Hb_031527_070--Hb_004195_060 Hb_009083_070 Hb_009083_070 Hb_027634_030--Hb_009083_070 Hb_000014_050 Hb_000014_050 Hb_027634_030--Hb_000014_050 Hb_027634_030--Hb_000270_520 Hb_007380_140 Hb_007380_140 Hb_027634_030--Hb_007380_140 Hb_145880_010 Hb_145880_010 Hb_027634_030--Hb_145880_010 Hb_142218_020 Hb_142218_020 Hb_027634_030--Hb_142218_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92579 1.63653 1.0231 1.55398 2.17424 0.731912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.594679 0.728223 1.67835 0

CAGE analysis