Hb_000014_050

Information

Type -
Description -
Location Contig14: 113931-124834
Sequence    

Annotation

kegg
ID tcc:TCM_012711
description ATPase, V1 complex, subunit B protein isoform 1
nr
ID XP_010943806.1
description PREDICTED: V-type proton ATPase subunit B 2 [Elaeis guineensis]
swissprot
ID Q9SZN1
description V-type proton ATPase subunit B2 OS=Arabidopsis thaliana GN=VHA-B2 PE=1 SV=1
trembl
ID A0A0D2S4G6
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G004300 PE=4 SV=1
Gene Ontology
ID GO:0033180
description v1 subunit b protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10798: 114108-117817
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000014_050 0.0 - - PREDICTED: V-type proton ATPase subunit B 2 [Elaeis guineensis]
2 Hb_002217_170 0.0763414085 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
3 Hb_005137_040 0.0954169085 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
4 Hb_002056_090 0.0961500799 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
5 Hb_002046_110 0.0966470878 - - PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]
6 Hb_003835_070 0.0974003223 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
7 Hb_001410_020 0.0975251328 - - cdk8, putative [Ricinus communis]
8 Hb_001195_530 0.0986141437 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003640_040 0.0988219694 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
10 Hb_002260_050 0.1002148382 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009083_070 0.1006526556 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
12 Hb_105105_010 0.1012312153 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
13 Hb_000373_230 0.1019802827 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
14 Hb_005918_010 0.1047854266 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
15 Hb_000012_260 0.1059500482 - - Far upstream element-binding 2 [Gossypium arboreum]
16 Hb_000949_020 0.106389915 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
17 Hb_000352_260 0.1064552753 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
18 Hb_003082_010 0.1073215998 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]
19 Hb_001277_020 0.1075723003 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
20 Hb_020831_030 0.1077229046 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000014_050 Hb_000014_050 Hb_002217_170 Hb_002217_170 Hb_000014_050--Hb_002217_170 Hb_005137_040 Hb_005137_040 Hb_000014_050--Hb_005137_040 Hb_002056_090 Hb_002056_090 Hb_000014_050--Hb_002056_090 Hb_002046_110 Hb_002046_110 Hb_000014_050--Hb_002046_110 Hb_003835_070 Hb_003835_070 Hb_000014_050--Hb_003835_070 Hb_001410_020 Hb_001410_020 Hb_000014_050--Hb_001410_020 Hb_002217_170--Hb_003835_070 Hb_001195_530 Hb_001195_530 Hb_002217_170--Hb_001195_530 Hb_000317_370 Hb_000317_370 Hb_002217_170--Hb_000317_370 Hb_003464_090 Hb_003464_090 Hb_002217_170--Hb_003464_090 Hb_105105_010 Hb_105105_010 Hb_002217_170--Hb_105105_010 Hb_000614_210 Hb_000614_210 Hb_002217_170--Hb_000614_210 Hb_005918_010 Hb_005918_010 Hb_005137_040--Hb_005918_010 Hb_000637_110 Hb_000637_110 Hb_005137_040--Hb_000637_110 Hb_012506_030 Hb_012506_030 Hb_005137_040--Hb_012506_030 Hb_005137_040--Hb_105105_010 Hb_000088_170 Hb_000088_170 Hb_005137_040--Hb_000088_170 Hb_000441_220 Hb_000441_220 Hb_005137_040--Hb_000441_220 Hb_020831_030 Hb_020831_030 Hb_002056_090--Hb_020831_030 Hb_003640_040 Hb_003640_040 Hb_002056_090--Hb_003640_040 Hb_002056_090--Hb_001195_530 Hb_002056_090--Hb_105105_010 Hb_000087_060 Hb_000087_060 Hb_002056_090--Hb_000087_060 Hb_002056_090--Hb_005137_040 Hb_009083_070 Hb_009083_070 Hb_002046_110--Hb_009083_070 Hb_002325_040 Hb_002325_040 Hb_002046_110--Hb_002325_040 Hb_005306_160 Hb_005306_160 Hb_002046_110--Hb_005306_160 Hb_000928_220 Hb_000928_220 Hb_002046_110--Hb_000928_220 Hb_001135_120 Hb_001135_120 Hb_002046_110--Hb_001135_120 Hb_000076_160 Hb_000076_160 Hb_002046_110--Hb_000076_160 Hb_002205_250 Hb_002205_250 Hb_003835_070--Hb_002205_250 Hb_003835_070--Hb_000614_210 Hb_003835_070--Hb_105105_010 Hb_012194_030 Hb_012194_030 Hb_003835_070--Hb_012194_030 Hb_011618_090 Hb_011618_090 Hb_003835_070--Hb_011618_090 Hb_000260_180 Hb_000260_180 Hb_001410_020--Hb_000260_180 Hb_162275_050 Hb_162275_050 Hb_001410_020--Hb_162275_050 Hb_012779_090 Hb_012779_090 Hb_001410_020--Hb_012779_090 Hb_000373_230 Hb_000373_230 Hb_001410_020--Hb_000373_230 Hb_006588_210 Hb_006588_210 Hb_001410_020--Hb_006588_210 Hb_000025_730 Hb_000025_730 Hb_001410_020--Hb_000025_730
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.21192 19.3109 16.3964 10.9137 15.9616 10.4159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.9658 6.7808 16.7378 14.2361 7.12035

CAGE analysis