Hb_000739_080

Information

Type -
Description -
Location Contig739: 87230-93226
Sequence    

Annotation

kegg
ID rcu:RCOM_0952830
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative (EC:2.1.1.14)
nr
ID XP_012066300.1
description PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Jatropha curcas]
swissprot
ID Q42699
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1
trembl
ID B9RQ33
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative OS=Ricinus communis GN=RCOM_0952830 PE=3 SV=1
Gene Ontology
ID GO:0005829
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56284: 87323-93226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000739_080 0.0 - - PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Jatropha curcas]
2 Hb_027136_010 0.1187704844 - - hypothetical protein L484_010426 [Morus notabilis]
3 Hb_000635_200 0.1264837583 rubber biosynthesis Gene Name: SRPP5 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
4 Hb_001103_090 0.1272310252 - - PREDICTED: patellin-3 [Populus euphratica]
5 Hb_000098_050 0.1289928195 - - BnaCnng11900D [Brassica napus]
6 Hb_000931_020 0.134795072 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
7 Hb_000622_340 0.1354729688 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [Jatropha curcas]
8 Hb_001259_120 0.1391463504 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
9 Hb_000205_280 0.1410140943 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
10 Hb_001159_030 0.1419709497 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
11 Hb_000085_260 0.1454552471 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
12 Hb_001675_320 0.1473716792 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
13 Hb_004645_070 0.1477905296 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
14 Hb_000679_100 0.149247964 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
15 Hb_135757_010 0.1497372053 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
16 Hb_004987_020 0.1516197702 - - -
17 Hb_000260_780 0.1521858436 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]
18 Hb_000580_030 0.1530343991 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
19 Hb_009247_010 0.153384065 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
20 Hb_150346_010 0.1540619548 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]

Gene co-expression network

sample Hb_000739_080 Hb_000739_080 Hb_027136_010 Hb_027136_010 Hb_000739_080--Hb_027136_010 Hb_000635_200 Hb_000635_200 Hb_000739_080--Hb_000635_200 Hb_001103_090 Hb_001103_090 Hb_000739_080--Hb_001103_090 Hb_000098_050 Hb_000098_050 Hb_000739_080--Hb_000098_050 Hb_000931_020 Hb_000931_020 Hb_000739_080--Hb_000931_020 Hb_000622_340 Hb_000622_340 Hb_000739_080--Hb_000622_340 Hb_150346_010 Hb_150346_010 Hb_027136_010--Hb_150346_010 Hb_027136_010--Hb_000635_200 Hb_002375_110 Hb_002375_110 Hb_027136_010--Hb_002375_110 Hb_178968_050 Hb_178968_050 Hb_027136_010--Hb_178968_050 Hb_004040_040 Hb_004040_040 Hb_027136_010--Hb_004040_040 Hb_000260_780 Hb_000260_780 Hb_027136_010--Hb_000260_780 Hb_004645_070 Hb_004645_070 Hb_000635_200--Hb_004645_070 Hb_002092_070 Hb_002092_070 Hb_000635_200--Hb_002092_070 Hb_000010_420 Hb_000010_420 Hb_000635_200--Hb_000010_420 Hb_002045_250 Hb_002045_250 Hb_000635_200--Hb_002045_250 Hb_004429_010 Hb_004429_010 Hb_000635_200--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_000635_200--Hb_002284_170 Hb_001675_320 Hb_001675_320 Hb_001103_090--Hb_001675_320 Hb_001226_110 Hb_001226_110 Hb_001103_090--Hb_001226_110 Hb_000205_280 Hb_000205_280 Hb_001103_090--Hb_000205_280 Hb_000020_160 Hb_000020_160 Hb_001103_090--Hb_000020_160 Hb_001259_120 Hb_001259_120 Hb_001103_090--Hb_001259_120 Hb_001103_090--Hb_000260_780 Hb_009247_010 Hb_009247_010 Hb_000098_050--Hb_009247_010 Hb_000320_290 Hb_000320_290 Hb_000098_050--Hb_000320_290 Hb_005062_110 Hb_005062_110 Hb_000098_050--Hb_005062_110 Hb_000085_260 Hb_000085_260 Hb_000098_050--Hb_000085_260 Hb_000890_030 Hb_000890_030 Hb_000098_050--Hb_000890_030 Hb_044486_020 Hb_044486_020 Hb_000098_050--Hb_044486_020 Hb_000931_020--Hb_000622_340 Hb_003078_020 Hb_003078_020 Hb_000931_020--Hb_003078_020 Hb_001357_040 Hb_001357_040 Hb_000931_020--Hb_001357_040 Hb_008937_010 Hb_008937_010 Hb_000931_020--Hb_008937_010 Hb_000991_040 Hb_000991_040 Hb_000931_020--Hb_000991_040 Hb_000260_600 Hb_000260_600 Hb_000931_020--Hb_000260_600 Hb_000622_340--Hb_000890_030 Hb_000622_340--Hb_000991_040 Hb_012760_030 Hb_012760_030 Hb_000622_340--Hb_012760_030 Hb_000622_340--Hb_008937_010 Hb_010407_060 Hb_010407_060 Hb_000622_340--Hb_010407_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.5051 87.7434 38.7715 114.167 42.3337 41.54
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.52788 5.10494 34.1291 57.7832 26.8999

CAGE analysis