Hb_005548_020

Information

Type -
Description -
Location Contig5548: 35431-36553
Sequence    

Annotation

kegg
ID rcu:RCOM_0328390
description hypothetical protein
nr
ID KDP44138.1
description hypothetical protein JCGZ_05605 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LA89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05605 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48464: 35636-36577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005548_020 0.0 - - hypothetical protein JCGZ_05605 [Jatropha curcas]
2 Hb_027634_030 0.1451979004 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
3 Hb_003050_390 0.1611436582 - - PREDICTED: uncharacterized protein LOC104442543 [Eucalyptus grandis]
4 Hb_001840_090 0.1649655592 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
5 Hb_000011_400 0.1698773172 transcription factor TF Family: ERF ethylene-responsive transcription factor 4 [Hevea brasiliensis]
6 Hb_003090_100 0.1760262183 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
7 Hb_000270_520 0.1775828833 - - PREDICTED: alpha-N-acetylglucosaminidase-like isoform X1 [Jatropha curcas]
8 Hb_134469_010 0.1791456069 - - PREDICTED: protein argonaute 5 isoform X1 [Jatropha curcas]
9 Hb_005188_030 0.1813248884 - - amino acid transporter, putative [Ricinus communis]
10 Hb_145880_010 0.1822659241 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
11 Hb_003082_010 0.184500879 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]
12 Hb_004324_400 0.1878831179 - - PREDICTED: protein timeless homolog [Jatropha curcas]
13 Hb_000270_510 0.1902307253 - - hypothetical protein CISIN_1g008173mg [Citrus sinensis]
14 Hb_000418_070 0.1905415308 - - auxin:hydrogen symporter, putative [Ricinus communis]
15 Hb_011311_020 0.1918956655 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
16 Hb_000853_120 0.1927088158 - - PREDICTED: ethylene response sensor 1 [Jatropha curcas]
17 Hb_144096_010 0.1934137558 - - aldo-keto reductase, putative [Ricinus communis]
18 Hb_002102_030 0.1937074993 - - -
19 Hb_010874_020 0.1941666672 - - PREDICTED: uncharacterized protein LOC105636745 [Jatropha curcas]
20 Hb_170487_020 0.1969274915 - - hypothetical protein JCGZ_17178 [Jatropha curcas]

Gene co-expression network

sample Hb_005548_020 Hb_005548_020 Hb_027634_030 Hb_027634_030 Hb_005548_020--Hb_027634_030 Hb_003050_390 Hb_003050_390 Hb_005548_020--Hb_003050_390 Hb_001840_090 Hb_001840_090 Hb_005548_020--Hb_001840_090 Hb_000011_400 Hb_000011_400 Hb_005548_020--Hb_000011_400 Hb_003090_100 Hb_003090_100 Hb_005548_020--Hb_003090_100 Hb_000270_520 Hb_000270_520 Hb_005548_020--Hb_000270_520 Hb_009083_070 Hb_009083_070 Hb_027634_030--Hb_009083_070 Hb_000014_050 Hb_000014_050 Hb_027634_030--Hb_000014_050 Hb_027634_030--Hb_000270_520 Hb_007380_140 Hb_007380_140 Hb_027634_030--Hb_007380_140 Hb_145880_010 Hb_145880_010 Hb_027634_030--Hb_145880_010 Hb_142218_020 Hb_142218_020 Hb_027634_030--Hb_142218_020 Hb_000270_510 Hb_000270_510 Hb_003050_390--Hb_000270_510 Hb_000080_150 Hb_000080_150 Hb_003050_390--Hb_000080_150 Hb_003050_390--Hb_000270_520 Hb_001135_130 Hb_001135_130 Hb_003050_390--Hb_001135_130 Hb_003528_010 Hb_003528_010 Hb_003050_390--Hb_003528_010 Hb_004204_170 Hb_004204_170 Hb_003050_390--Hb_004204_170 Hb_002900_090 Hb_002900_090 Hb_001840_090--Hb_002900_090 Hb_005000_260 Hb_005000_260 Hb_001840_090--Hb_005000_260 Hb_006922_010 Hb_006922_010 Hb_001840_090--Hb_006922_010 Hb_000739_100 Hb_000739_100 Hb_001840_090--Hb_000739_100 Hb_001840_090--Hb_145880_010 Hb_003071_020 Hb_003071_020 Hb_001840_090--Hb_003071_020 Hb_001123_320 Hb_001123_320 Hb_000011_400--Hb_001123_320 Hb_009620_020 Hb_009620_020 Hb_000011_400--Hb_009620_020 Hb_000011_400--Hb_001840_090 Hb_000363_210 Hb_000363_210 Hb_000011_400--Hb_000363_210 Hb_000225_060 Hb_000225_060 Hb_000011_400--Hb_000225_060 Hb_003994_060 Hb_003994_060 Hb_000011_400--Hb_003994_060 Hb_007904_130 Hb_007904_130 Hb_003090_100--Hb_007904_130 Hb_003090_100--Hb_001840_090 Hb_003544_030 Hb_003544_030 Hb_003090_100--Hb_003544_030 Hb_001642_070 Hb_001642_070 Hb_003090_100--Hb_001642_070 Hb_083799_010 Hb_083799_010 Hb_003090_100--Hb_083799_010 Hb_000600_060 Hb_000600_060 Hb_003090_100--Hb_000600_060 Hb_000270_520--Hb_142218_020 Hb_000270_520--Hb_000270_510 Hb_005137_040 Hb_005137_040 Hb_000270_520--Hb_005137_040 Hb_000703_150 Hb_000703_150 Hb_000270_520--Hb_000703_150 Hb_000035_200 Hb_000035_200 Hb_000270_520--Hb_000035_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9936 14.1671 5.26564 15.3953 12.0113 4.68346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.90676 6.11708 18.4346 14.2251 1.14988

CAGE analysis