Hb_004945_020

Information

Type -
Description -
Location Contig4945: 8167-8640
Sequence    

Annotation

kegg
ID vvi:100248178
description probable calcium-binding protein CML30
nr
ID XP_002269392.2
description PREDICTED: probable calcium-binding protein CML30 [Vitis vinifera]
swissprot
ID Q93Z27
description Probable calcium-binding protein CML45 OS=Arabidopsis thaliana GN=CML45 PE=1 SV=1
trembl
ID F6HPQ4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004945_020 0.0 - - PREDICTED: probable calcium-binding protein CML30 [Vitis vinifera]
2 Hb_001214_150 0.2168111579 - - PREDICTED: uncharacterized protein LOC102624288 [Citrus sinensis]
3 Hb_005946_120 0.2262755348 - - peptidase, putative [Ricinus communis]
4 Hb_002631_220 0.2361080254 - - Patellin-4, putative [Ricinus communis]
5 Hb_005675_060 0.2362552562 - - PREDICTED: protein NIM1-INTERACTING 2 [Jatropha curcas]
6 Hb_131864_030 0.2587402538 transcription factor TF Family: C2H2 transcription factor, putative [Ricinus communis]
7 Hb_126648_010 0.2603601913 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
8 Hb_000608_220 0.2657533004 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
9 Hb_163430_010 0.2746290338 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
10 Hb_005883_070 0.2756141838 - - PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]
11 Hb_011609_040 0.2778307733 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
12 Hb_115116_010 0.2788117938 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
13 Hb_095471_020 0.2820655203 - - -
14 Hb_007592_020 0.2844260107 - - acyltransferase, putative [Ricinus communis]
15 Hb_000803_310 0.2855030309 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
16 Hb_003589_020 0.2872175555 - - -
17 Hb_000058_050 0.2898122244 - - PREDICTED: uncharacterized protein LOC105640877 [Jatropha curcas]
18 Hb_001907_130 0.2901202097 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
19 Hb_002897_070 0.2938686609 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
20 Hb_001369_470 0.2962789043 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]

Gene co-expression network

sample Hb_004945_020 Hb_004945_020 Hb_001214_150 Hb_001214_150 Hb_004945_020--Hb_001214_150 Hb_005946_120 Hb_005946_120 Hb_004945_020--Hb_005946_120 Hb_002631_220 Hb_002631_220 Hb_004945_020--Hb_002631_220 Hb_005675_060 Hb_005675_060 Hb_004945_020--Hb_005675_060 Hb_131864_030 Hb_131864_030 Hb_004945_020--Hb_131864_030 Hb_126648_010 Hb_126648_010 Hb_004945_020--Hb_126648_010 Hb_001214_150--Hb_002631_220 Hb_001214_150--Hb_005946_120 Hb_101733_040 Hb_101733_040 Hb_001214_150--Hb_101733_040 Hb_171718_020 Hb_171718_020 Hb_001214_150--Hb_171718_020 Hb_025214_090 Hb_025214_090 Hb_001214_150--Hb_025214_090 Hb_000112_100 Hb_000112_100 Hb_005946_120--Hb_000112_100 Hb_020178_010 Hb_020178_010 Hb_005946_120--Hb_020178_010 Hb_000031_330 Hb_000031_330 Hb_005946_120--Hb_000031_330 Hb_000953_080 Hb_000953_080 Hb_005946_120--Hb_000953_080 Hb_002447_160 Hb_002447_160 Hb_002631_220--Hb_002447_160 Hb_089140_010 Hb_089140_010 Hb_002631_220--Hb_089140_010 Hb_007592_020 Hb_007592_020 Hb_002631_220--Hb_007592_020 Hb_002631_220--Hb_126648_010 Hb_000803_310 Hb_000803_310 Hb_005675_060--Hb_000803_310 Hb_001907_130 Hb_001907_130 Hb_005675_060--Hb_001907_130 Hb_027472_130 Hb_027472_130 Hb_005675_060--Hb_027472_130 Hb_000401_010 Hb_000401_010 Hb_005675_060--Hb_000401_010 Hb_005675_060--Hb_131864_030 Hb_011609_040 Hb_011609_040 Hb_131864_030--Hb_011609_040 Hb_131864_030--Hb_027472_130 Hb_005883_070 Hb_005883_070 Hb_131864_030--Hb_005883_070 Hb_002942_090 Hb_002942_090 Hb_131864_030--Hb_002942_090 Hb_000058_050 Hb_000058_050 Hb_131864_030--Hb_000058_050 Hb_002321_040 Hb_002321_040 Hb_126648_010--Hb_002321_040 Hb_126648_010--Hb_011609_040 Hb_005048_110 Hb_005048_110 Hb_126648_010--Hb_005048_110 Hb_013834_010 Hb_013834_010 Hb_126648_010--Hb_013834_010 Hb_002325_030 Hb_002325_030 Hb_126648_010--Hb_002325_030 Hb_000692_210 Hb_000692_210 Hb_126648_010--Hb_000692_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.142824 0.909113 1.69897 0.626942 0.85325 0.056268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.46105 0 0.818987 0

CAGE analysis