Hb_002942_090

Information

Type -
Description -
Location Contig2942: 90108-92339
Sequence    

Annotation

kegg
ID tcc:TCM_014747
description DNAJ heat shock N-terminal domain-containing protein, putative
nr
ID XP_007038127.1
description DNAJ heat shock N-terminal domain-containing protein, putative [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FZX6
description DNAJ heat shock N-terminal domain-containing protein, putative OS=Theobroma cacao GN=TCM_014747 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30783: 90064-90568
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_090 0.0 - - DNAJ heat shock N-terminal domain-containing protein, putative [Theobroma cacao]
2 Hb_000997_150 0.1513801552 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_000058_050 0.1671091274 - - PREDICTED: uncharacterized protein LOC105640877 [Jatropha curcas]
4 Hb_003026_030 0.1672840645 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
5 Hb_002400_230 0.170317391 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
6 Hb_001269_310 0.1712889911 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
7 Hb_004223_110 0.1726669161 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
8 Hb_013405_150 0.1735867128 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
9 Hb_001196_080 0.1738812755 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
10 Hb_000671_060 0.1739331289 - - protein binding protein, putative [Ricinus communis]
11 Hb_002897_070 0.1799904563 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
12 Hb_000732_070 0.1801570538 - - PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
13 Hb_001277_360 0.181645885 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
14 Hb_000139_180 0.181947291 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
15 Hb_000107_480 0.1821368541 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
16 Hb_003090_150 0.1822069905 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
17 Hb_002291_060 0.1846361591 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
18 Hb_044155_010 0.1864003873 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
19 Hb_069841_010 0.1922912022 - - resistance protein [Quercus suber]
20 Hb_012586_050 0.1924671975 - - PREDICTED: triosephosphate isomerase, cytosolic [Prunus mume]

Gene co-expression network

sample Hb_002942_090 Hb_002942_090 Hb_000997_150 Hb_000997_150 Hb_002942_090--Hb_000997_150 Hb_000058_050 Hb_000058_050 Hb_002942_090--Hb_000058_050 Hb_003026_030 Hb_003026_030 Hb_002942_090--Hb_003026_030 Hb_002400_230 Hb_002400_230 Hb_002942_090--Hb_002400_230 Hb_001269_310 Hb_001269_310 Hb_002942_090--Hb_001269_310 Hb_004223_110 Hb_004223_110 Hb_002942_090--Hb_004223_110 Hb_000732_070 Hb_000732_070 Hb_000997_150--Hb_000732_070 Hb_001454_220 Hb_001454_220 Hb_000997_150--Hb_001454_220 Hb_000997_150--Hb_001269_310 Hb_000997_150--Hb_002400_230 Hb_044155_010 Hb_044155_010 Hb_000997_150--Hb_044155_010 Hb_000185_150 Hb_000185_150 Hb_000997_150--Hb_000185_150 Hb_002609_190 Hb_002609_190 Hb_000058_050--Hb_002609_190 Hb_010368_080 Hb_010368_080 Hb_000058_050--Hb_010368_080 Hb_012305_140 Hb_012305_140 Hb_000058_050--Hb_012305_140 Hb_000076_100 Hb_000076_100 Hb_000058_050--Hb_000076_100 Hb_005568_090 Hb_005568_090 Hb_000058_050--Hb_005568_090 Hb_001196_080 Hb_001196_080 Hb_000058_050--Hb_001196_080 Hb_000264_180 Hb_000264_180 Hb_003026_030--Hb_000264_180 Hb_003026_030--Hb_044155_010 Hb_003026_030--Hb_002400_230 Hb_002291_060 Hb_002291_060 Hb_003026_030--Hb_002291_060 Hb_003026_030--Hb_000997_150 Hb_002450_140 Hb_002450_140 Hb_003026_030--Hb_002450_140 Hb_002400_230--Hb_000732_070 Hb_001454_170 Hb_001454_170 Hb_002400_230--Hb_001454_170 Hb_000334_130 Hb_000334_130 Hb_002400_230--Hb_000334_130 Hb_002400_230--Hb_001454_220 Hb_152540_010 Hb_152540_010 Hb_002400_230--Hb_152540_010 Hb_004032_230 Hb_004032_230 Hb_002400_230--Hb_004032_230 Hb_001269_310--Hb_004223_110 Hb_001051_090 Hb_001051_090 Hb_001269_310--Hb_001051_090 Hb_001269_310--Hb_002400_230 Hb_000175_630 Hb_000175_630 Hb_001269_310--Hb_000175_630 Hb_001269_310--Hb_003026_030 Hb_007163_060 Hb_007163_060 Hb_004223_110--Hb_007163_060 Hb_000608_350 Hb_000608_350 Hb_004223_110--Hb_000608_350 Hb_008921_010 Hb_008921_010 Hb_004223_110--Hb_008921_010 Hb_172257_010 Hb_172257_010 Hb_004223_110--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_004223_110--Hb_000589_190 Hb_005322_050 Hb_005322_050 Hb_004223_110--Hb_005322_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0742654 0.648059 0.881052 0.342094 0.720237 0.251086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0999767 0.0472006 0.149593 0.118814 0.233461

CAGE analysis