Hb_152540_010

Information

Type -
Description -
Location Contig152540: 935-1958
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152540_010 0.0 - - -
2 Hb_002400_230 0.1244475005 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
3 Hb_000086_050 0.1296368418 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
4 Hb_009449_090 0.1298592539 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
5 Hb_006618_040 0.1336696401 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
6 Hb_007576_220 0.1386282678 - - PREDICTED: kanadaptin [Jatropha curcas]
7 Hb_002687_090 0.1430670087 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
8 Hb_000024_120 0.1454433852 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
9 Hb_006658_030 0.1464663683 - - hypothetical protein JCGZ_04047 [Jatropha curcas]
10 Hb_007576_230 0.1490682644 - - hypothetical protein JCGZ_25616 [Jatropha curcas]
11 Hb_013405_160 0.1515340766 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
12 Hb_003026_030 0.1555915408 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
13 Hb_000334_170 0.1570013604 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42 isoform X1 [Jatropha curcas]
14 Hb_000185_150 0.1577939895 - - Heme-binding protein, putative [Ricinus communis]
15 Hb_003750_060 0.1581980264 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
16 Hb_000327_080 0.1583737039 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
17 Hb_000300_250 0.1584654203 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
18 Hb_000732_070 0.1597478511 - - PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
19 Hb_000500_300 0.1598818898 - - PREDICTED: nucleolar protein 10 [Jatropha curcas]
20 Hb_007818_040 0.1611229444 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_152540_010 Hb_152540_010 Hb_002400_230 Hb_002400_230 Hb_152540_010--Hb_002400_230 Hb_000086_050 Hb_000086_050 Hb_152540_010--Hb_000086_050 Hb_009449_090 Hb_009449_090 Hb_152540_010--Hb_009449_090 Hb_006618_040 Hb_006618_040 Hb_152540_010--Hb_006618_040 Hb_007576_220 Hb_007576_220 Hb_152540_010--Hb_007576_220 Hb_002687_090 Hb_002687_090 Hb_152540_010--Hb_002687_090 Hb_000732_070 Hb_000732_070 Hb_002400_230--Hb_000732_070 Hb_001454_170 Hb_001454_170 Hb_002400_230--Hb_001454_170 Hb_000334_130 Hb_000334_130 Hb_002400_230--Hb_000334_130 Hb_001454_220 Hb_001454_220 Hb_002400_230--Hb_001454_220 Hb_004032_230 Hb_004032_230 Hb_002400_230--Hb_004032_230 Hb_000086_050--Hb_009449_090 Hb_007283_030 Hb_007283_030 Hb_000086_050--Hb_007283_030 Hb_000086_050--Hb_007576_220 Hb_000086_050--Hb_002687_090 Hb_007576_230 Hb_007576_230 Hb_000086_050--Hb_007576_230 Hb_155159_010 Hb_155159_010 Hb_000086_050--Hb_155159_010 Hb_009449_090--Hb_007576_220 Hb_005539_040 Hb_005539_040 Hb_009449_090--Hb_005539_040 Hb_002571_030 Hb_002571_030 Hb_009449_090--Hb_002571_030 Hb_000024_120 Hb_000024_120 Hb_009449_090--Hb_000024_120 Hb_009449_090--Hb_007283_030 Hb_001232_100 Hb_001232_100 Hb_006618_040--Hb_001232_100 Hb_000334_170 Hb_000334_170 Hb_006618_040--Hb_000334_170 Hb_000343_110 Hb_000343_110 Hb_006618_040--Hb_000343_110 Hb_000941_140 Hb_000941_140 Hb_006618_040--Hb_000941_140 Hb_006618_040--Hb_002400_230 Hb_004296_010 Hb_004296_010 Hb_006618_040--Hb_004296_010 Hb_007576_220--Hb_007576_230 Hb_007576_220--Hb_155159_010 Hb_007576_220--Hb_005539_040 Hb_002073_280 Hb_002073_280 Hb_007576_220--Hb_002073_280 Hb_013405_160 Hb_013405_160 Hb_002687_090--Hb_013405_160 Hb_000703_130 Hb_000703_130 Hb_002687_090--Hb_000703_130 Hb_007818_030 Hb_007818_030 Hb_002687_090--Hb_007818_030 Hb_000579_010 Hb_000579_010 Hb_002687_090--Hb_000579_010 Hb_002687_090--Hb_007283_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.38757 13.618 9.87048 1.95109 14.4466 3.5839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.48809 2.61058 2.38623 5.37132 9.32256

CAGE analysis