Hb_013405_160

Information

Type -
Description -
Location Contig13405: 97662-104195
Sequence    

Annotation

kegg
ID rcu:RCOM_1583020
description hypothetical protein
nr
ID XP_012078518.1
description PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
swissprot
ID Q94AI4
description Methyltransferase-like protein 1 OS=Arabidopsis thaliana GN=EMB1691 PE=2 SV=1
trembl
ID A0A067K947
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13192 PE=4 SV=1
Gene Ontology
ID GO:0005829
description methyltransferase-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09676: 97751-104012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013405_160 0.0 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
2 Hb_002687_090 0.0483685933 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
3 Hb_000579_010 0.0572223689 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
4 Hb_000703_130 0.0676753889 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
5 Hb_000083_070 0.0756628105 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
6 Hb_000377_050 0.0788179449 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
7 Hb_000645_130 0.0802779363 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
8 Hb_000265_090 0.0860007638 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
9 Hb_009476_090 0.0864163363 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
10 Hb_002600_060 0.0876295904 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
11 Hb_007818_030 0.0878863681 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
12 Hb_000958_050 0.0885001853 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
13 Hb_003805_050 0.0886335896 - - -
14 Hb_000086_050 0.0892345838 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
15 Hb_011689_030 0.0896987686 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
16 Hb_024185_010 0.0901456067 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
17 Hb_007283_030 0.0916304507 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
18 Hb_000205_260 0.0921647041 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
19 Hb_001133_030 0.0930549893 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
20 Hb_007305_020 0.0935843193 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]

Gene co-expression network

sample Hb_013405_160 Hb_013405_160 Hb_002687_090 Hb_002687_090 Hb_013405_160--Hb_002687_090 Hb_000579_010 Hb_000579_010 Hb_013405_160--Hb_000579_010 Hb_000703_130 Hb_000703_130 Hb_013405_160--Hb_000703_130 Hb_000083_070 Hb_000083_070 Hb_013405_160--Hb_000083_070 Hb_000377_050 Hb_000377_050 Hb_013405_160--Hb_000377_050 Hb_000645_130 Hb_000645_130 Hb_013405_160--Hb_000645_130 Hb_002687_090--Hb_000703_130 Hb_007818_030 Hb_007818_030 Hb_002687_090--Hb_007818_030 Hb_000086_050 Hb_000086_050 Hb_002687_090--Hb_000086_050 Hb_002687_090--Hb_000579_010 Hb_007283_030 Hb_007283_030 Hb_002687_090--Hb_007283_030 Hb_000579_010--Hb_000703_130 Hb_003939_060 Hb_003939_060 Hb_000579_010--Hb_003939_060 Hb_000958_050 Hb_000958_050 Hb_000579_010--Hb_000958_050 Hb_000579_010--Hb_000083_070 Hb_000099_040 Hb_000099_040 Hb_000579_010--Hb_000099_040 Hb_000265_090 Hb_000265_090 Hb_000703_130--Hb_000265_090 Hb_000176_100 Hb_000176_100 Hb_000703_130--Hb_000176_100 Hb_000703_130--Hb_007818_030 Hb_009476_090 Hb_009476_090 Hb_000703_130--Hb_009476_090 Hb_001133_030 Hb_001133_030 Hb_000083_070--Hb_001133_030 Hb_000925_090 Hb_000925_090 Hb_000083_070--Hb_000925_090 Hb_003805_050 Hb_003805_050 Hb_000083_070--Hb_003805_050 Hb_000261_150 Hb_000261_150 Hb_000083_070--Hb_000261_150 Hb_000025_710 Hb_000025_710 Hb_000083_070--Hb_000025_710 Hb_012244_020 Hb_012244_020 Hb_000083_070--Hb_012244_020 Hb_000377_050--Hb_009476_090 Hb_000377_050--Hb_007283_030 Hb_005832_010 Hb_005832_010 Hb_000377_050--Hb_005832_010 Hb_001959_270 Hb_001959_270 Hb_000377_050--Hb_001959_270 Hb_007818_040 Hb_007818_040 Hb_000377_050--Hb_007818_040 Hb_000377_050--Hb_000703_130 Hb_009302_030 Hb_009302_030 Hb_000645_130--Hb_009302_030 Hb_000645_130--Hb_000958_050 Hb_004659_090 Hb_004659_090 Hb_000645_130--Hb_004659_090 Hb_000645_130--Hb_003939_060 Hb_000500_300 Hb_000500_300 Hb_000645_130--Hb_000500_300 Hb_000806_030 Hb_000806_030 Hb_000645_130--Hb_000806_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.23509 21.2333 10.9069 6.10581 12.695 8.81089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.85533 4.26956 5.15452 9.14854 17.8598

CAGE analysis