Hb_000816_270

Information

Type -
Description -
Location Contig816: 264807-271047
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59431: 269195-270881
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000816_270 0.0 - - -
2 Hb_004228_090 0.2648984411 - - -
3 Hb_007125_010 0.2905901642 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
4 Hb_002311_060 0.3099504915 - - PREDICTED: protein trichome birefringence-like 4 [Jatropha curcas]
5 Hb_161929_010 0.3324684467 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
6 Hb_003760_040 0.3340232806 - - organic anion transporter, putative [Ricinus communis]
7 Hb_001277_310 0.3367741731 - - PREDICTED: putative ribonuclease H protein At1g65750 [Phoenix dactylifera]
8 Hb_000144_140 0.338721776 - - PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]
9 Hb_013429_020 0.3418466642 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
10 Hb_000980_070 0.3449816233 - - PREDICTED: uncharacterized protein LOC103440883 [Malus domestica]
11 Hb_092995_020 0.3505940097 - - -
12 Hb_113034_010 0.3516061397 - - -
13 Hb_176825_010 0.3541544318 - - PREDICTED: uncharacterized protein LOC105630857 isoform X2 [Jatropha curcas]
14 Hb_009615_080 0.3546093436 - - hypothetical protein JCGZ_24461 [Jatropha curcas]
15 Hb_008494_050 0.3562779103 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
16 Hb_020580_010 0.3594267839 - - -
17 Hb_021616_010 0.3610526301 - - -
18 Hb_001242_010 0.36518061 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
19 Hb_001006_240 0.3653138316 - - -
20 Hb_010142_080 0.3660822197 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]

Gene co-expression network

sample Hb_000816_270 Hb_000816_270 Hb_004228_090 Hb_004228_090 Hb_000816_270--Hb_004228_090 Hb_007125_010 Hb_007125_010 Hb_000816_270--Hb_007125_010 Hb_002311_060 Hb_002311_060 Hb_000816_270--Hb_002311_060 Hb_161929_010 Hb_161929_010 Hb_000816_270--Hb_161929_010 Hb_003760_040 Hb_003760_040 Hb_000816_270--Hb_003760_040 Hb_001277_310 Hb_001277_310 Hb_000816_270--Hb_001277_310 Hb_004228_090--Hb_002311_060 Hb_134015_010 Hb_134015_010 Hb_004228_090--Hb_134015_010 Hb_008778_010 Hb_008778_010 Hb_004228_090--Hb_008778_010 Hb_006911_050 Hb_006911_050 Hb_004228_090--Hb_006911_050 Hb_001554_010 Hb_001554_010 Hb_004228_090--Hb_001554_010 Hb_009615_080 Hb_009615_080 Hb_007125_010--Hb_009615_080 Hb_006683_010 Hb_006683_010 Hb_007125_010--Hb_006683_010 Hb_092995_020 Hb_092995_020 Hb_007125_010--Hb_092995_020 Hb_127993_010 Hb_127993_010 Hb_007125_010--Hb_127993_010 Hb_054362_010 Hb_054362_010 Hb_007125_010--Hb_054362_010 Hb_169574_010 Hb_169574_010 Hb_007125_010--Hb_169574_010 Hb_002311_060--Hb_134015_010 Hb_002311_060--Hb_008778_010 Hb_021576_020 Hb_021576_020 Hb_002311_060--Hb_021576_020 Hb_003680_210 Hb_003680_210 Hb_002311_060--Hb_003680_210 Hb_008370_010 Hb_008370_010 Hb_161929_010--Hb_008370_010 Hb_001477_140 Hb_001477_140 Hb_161929_010--Hb_001477_140 Hb_005532_010 Hb_005532_010 Hb_161929_010--Hb_005532_010 Hb_161929_010--Hb_003760_040 Hb_005483_010 Hb_005483_010 Hb_161929_010--Hb_005483_010 Hb_021616_010 Hb_021616_010 Hb_161929_010--Hb_021616_010 Hb_003760_040--Hb_005483_010 Hb_003760_040--Hb_021616_010 Hb_002513_030 Hb_002513_030 Hb_003760_040--Hb_002513_030 Hb_010142_080 Hb_010142_080 Hb_003760_040--Hb_010142_080 Hb_003446_040 Hb_003446_040 Hb_003760_040--Hb_003446_040 Hb_004413_030 Hb_004413_030 Hb_001277_310--Hb_004413_030 Hb_000144_140 Hb_000144_140 Hb_001277_310--Hb_000144_140 Hb_001277_310--Hb_003446_040 Hb_006344_010 Hb_006344_010 Hb_001277_310--Hb_006344_010 Hb_001009_130 Hb_001009_130 Hb_001277_310--Hb_001009_130 Hb_135624_010 Hb_135624_010 Hb_001277_310--Hb_135624_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0162752 0.0524098 0 0.0404386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.136882 0.0892607 0

CAGE analysis